Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 1e-22
>seq3
Length=5817774
Score = 122 bits (134), Expect = 1e-22
Identities = 298/452 (66%), Gaps = 0/452 (0%)
Strand=Plus/Plus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
||||| || || || | || ||| ||| || || |||||| ||||| | || | |
Sbjct 3751517 TCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTC 3751576
Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044
|| || ||| | || || || ||||| |||||||| || |||| ||||| | ||
Sbjct 3751577 CATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAGAAG 3751636
Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104
|| || |||| | ||| || || || |||||| | || | ||||| |
Sbjct 3751637 AGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCGAAG 3751696
Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164
| ||| | ||||| || || || || | || | | || || || || ||||||||
Sbjct 3751697 ACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCTCCT 3751756
Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224
|| || | |||||| ||||||||||| | || | | ||| || | || ||||| ||
Sbjct 3751757 TGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAA 3751816
Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284
| ||||||||| || | ||| ||| || | || | ||| | | | | |||
Sbjct 3751817 GATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGCCCG 3751876
Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344
|| ||||| ||| |||| || || | || || ||||| |||||||| ||||||||
Sbjct 3751877 ATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCCTCA 3751936
Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACA 78376
|| ||||| || |||||| | || |||||
Sbjct 3751937 ATGCTGTCCTCTTTCATGTCGATGAGGAAACA 3751968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668739216480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |