Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 1e-17
seq1 89.7 7e-13
>seq3
Length=5817774
Score = 105 bits (116), Expect = 1e-17
Identities = 692/1101 (63%), Gaps = 24/1101 (2%)
Strand=Plus/Plus
Query 75366 TCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424
|||| ||||| ||||| ||||| || | |||||| | | || || || ||||||||
Sbjct 3750298 TCTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATC 3750357
Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484
||||| || |||||||| |||| || || |||||||| || | ||| ||
Sbjct 3750358 CCAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTC 3750417
Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544
|| || || || ||||||| || ||| |||||||||||||| || | || ||
Sbjct 3750418 GGGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCA 3750477
Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604
||||| | | || || || | ||| ||||||| || ||| | | ||||||
Sbjct 3750478 GCCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATA 3750537
Query 75605 TCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661
|| | || | ||| | |||| ||||| || || || || | ||||| |||||
Sbjct 3750538 TCTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTC 3750597
Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721
|| | || ||| | | || || || | || || ||| || |||| |
Sbjct 3750598 ATGTTGTCGGACCAAAGACCCATATCAACCAAGTCTTTCAGTAGCCAAGGGTTGACAACT 3750657
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|| || ||||| | || ||| | || | ||||| || ||| || || || | ||
Sbjct 3750658 TGGAACTCTCCTGCCAGTACACGACGCGAATAAATGTTGGAGGTGTAGGGCTCGAAGCAT 3750717
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|||||| || | |||||| || ||||||||||| || || || | || ||
Sbjct 3750718 TCATTGAACCCAAGGATTTGACTTGTACTGGCAGTCGGCATGGGCGCGACAAGCAAGCTG 3750777
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
|| | ||||| | | || | | || || ||| |||||||||||| || |
Sbjct 3750778 TTCTTCGCACCATATTTAGCGACATCGGCCTTGAGTGATTGCCAATCCCAAAGGTCAGTA 3750837
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATA--TGATCCATTAT 75959
|| || ||||| | ||||||||| | || || |||| | || | |||||| | ||
Sbjct 3750838 GGAGTGACGTCCCATAAATCGTATTGGAAAAGGCC-TTGCGA-CAAAGGTGATCCTTCAT 3750895
Query 75960 ATGTTTCGTA-AGTCCCG--TCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGT 76016
|||| ||| |||| | |||||| || | || ||| || | || ||||
Sbjct 3750896 ATGTAGAGTAGGGTCCAGACTCCTTT---GCCATTTGGCAGGAGGCTGTCATGGCTCCGT 3750952
Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGAT 76076
|| || || ||||| |||| | ||||| | | || || | || || ||
Sbjct 3750953 GGTATATGGTCTCGAAGATCTGAATGTTAAGTTGCTTAGCCTCCGGCGAGTCGAACGG-- 3751010
Query 76077 AATGTAAAAGAATA--AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134
|| | || || || ||||| || || ||||| || || | | | || ||||||||
Sbjct 3751011 AAGGCGAAGCGCTAGGAAGGCATCAGCAAGCCCCTGGACACCGAGAGCGATGGGTCTATG 3751070
Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194
||| ||| | || ||| | ||||| | || ||||| ||||| || ||
Sbjct 3751071 TCTGAAGTTGCTTCGCTTGGCCTCTTCGACTGGGTAGTGGTTGATATCGATAATCTTGTT 3751130
Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCA-T 76253
||||||| |||| |||| || || || | ||| || ||| ||| | | |||
Sbjct 3751131 TAGATTTCGAACAAGGACTTGTACAACCTCGTGTAGCTTCCCAAAGTCATACTCCCCACG 3751190
Query 76254 CTAT-CACAAACATATTA----AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308
|| | || || | || |||| || || | ||| ||||| ||||||||||
Sbjct 3751191 AGATGCGTCGACGTAAGAGGGGAGTGCTAGCGAAGCCAAATTGCAAACTGCTACCTCATC 3751250
Query 76309 AGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATT 76368
| | ||| | | || || ||||| ||||| | || || || |||||
Sbjct 3751251 TGGTGCAGTATACTCGACAATTTCGGTGCAGAGATTCGAGCTGCGAATTGTGCCGAGATT 3751310
Query 76369 TTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428
| |||||||||||| |||||| | ||| || || || | || || | || || ||
Sbjct 3751311 CTTTTGGTTGCTCTTGCGGTTACACGCGTCTTTGTACAGCATGAAGGGGTTGCCGGTCTC 3751370
Query 76429 AATCTGTGATTCGATAATAGA 76449
|||| | ||||| ||| ||
Sbjct 3751371 CGTCTGGGCTTCGAGAATTGA 3751391
>seq1
Length=10671843
Score = 89.7 bits (98), Expect = 7e-13
Identities = 225/336 (67%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 46850 TTGTTTCTATAGCATTAAAGAGAAA-GtttttttCATCACTATCTTTAACATATGTATCT 46908
|||| || ||||||| ||||||| | ||| || | || || || | |||||| ||
Sbjct 3822988 TTGTGTCGATAGCATCAAAGAGATACGTTCGTTGCTTCTGC-TCCTTGATATATGTGTCG 3822930
Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968
|| | ||| || | || || || ||||| || || ||||| || ||||| ||
Sbjct 3822929 ATGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAG 3822870
Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028
|||| ||| |||| || || || || || || || ||| | ||||| || ||
Sbjct 3822869 CATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACG 3822810
Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--G 47086
|| ||||| ||||||||||| || | || || ||| || || ||| ||| |
Sbjct 3822809 ATACCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTCGTCG 3822750
Query 47087 T--AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144
| |||| | || ||||| || | | |||||| || | || | ||||| || |||||
Sbjct 3822749 TTGAGTCTG-TTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCA 3822691
Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180
|||||| || || || || || ||||| | ||| ||
Sbjct 3822690 GAATGATGCTTCAGCCTTCTTGTACATCTGCCAGAT 3822655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712934337618240
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