Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-17 seq1 89.7 7e-13 >seq3 Length=5817774 Score = 105 bits (116), Expect = 1e-17 Identities = 692/1101 (63%), Gaps = 24/1101 (2%) Strand=Plus/Plus Query 75366 TCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 |||| ||||| ||||| ||||| || | |||||| | | || || || |||||||| Sbjct 3750298 TCTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATC 3750357 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 ||||| || |||||||| |||| || || |||||||| || | ||| || Sbjct 3750358 CCAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTC 3750417 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || || ||||||| || ||| |||||||||||||| || | || || Sbjct 3750418 GGGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCA 3750477 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 ||||| | | || || || | ||| ||||||| || ||| | | |||||| Sbjct 3750478 GCCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATA 3750537 Query 75605 TCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 || | || | ||| | |||| ||||| || || || || | ||||| ||||| Sbjct 3750538 TCTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTC 3750597 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 || | || ||| | | || || || | || || ||| || |||| | Sbjct 3750598 ATGTTGTCGGACCAAAGACCCATATCAACCAAGTCTTTCAGTAGCCAAGGGTTGACAACT 3750657 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || ||||| | || ||| | || | ||||| || ||| || || || | || Sbjct 3750658 TGGAACTCTCCTGCCAGTACACGACGCGAATAAATGTTGGAGGTGTAGGGCTCGAAGCAT 3750717 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||| || | |||||| || ||||||||||| || || || | || || Sbjct 3750718 TCATTGAACCCAAGGATTTGACTTGTACTGGCAGTCGGCATGGGCGCGACAAGCAAGCTG 3750777 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | ||||| | | || | | || || ||| |||||||||||| || | Sbjct 3750778 TTCTTCGCACCATATTTAGCGACATCGGCCTTGAGTGATTGCCAATCCCAAAGGTCAGTA 3750837 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATA--TGATCCATTAT 75959 || || ||||| | ||||||||| | || || |||| | || | |||||| | || Sbjct 3750838 GGAGTGACGTCCCATAAATCGTATTGGAAAAGGCC-TTGCGA-CAAAGGTGATCCTTCAT 3750895 Query 75960 ATGTTTCGTA-AGTCCCG--TCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGT 76016 |||| ||| |||| | |||||| || | || ||| || | || |||| Sbjct 3750896 ATGTAGAGTAGGGTCCAGACTCCTTT---GCCATTTGGCAGGAGGCTGTCATGGCTCCGT 3750952 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGAT 76076 || || || ||||| |||| | ||||| | | || || | || || || Sbjct 3750953 GGTATATGGTCTCGAAGATCTGAATGTTAAGTTGCTTAGCCTCCGGCGAGTCGAACGG-- 3751010 Query 76077 AATGTAAAAGAATA--AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 || | || || || ||||| || || ||||| || || | | | || |||||||| Sbjct 3751011 AAGGCGAAGCGCTAGGAAGGCATCAGCAAGCCCCTGGACACCGAGAGCGATGGGTCTATG 3751070 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 ||| ||| | || ||| | ||||| | || ||||| ||||| || || Sbjct 3751071 TCTGAAGTTGCTTCGCTTGGCCTCTTCGACTGGGTAGTGGTTGATATCGATAATCTTGTT 3751130 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCA-T 76253 ||||||| |||| |||| || || || | ||| || ||| ||| | | ||| Sbjct 3751131 TAGATTTCGAACAAGGACTTGTACAACCTCGTGTAGCTTCCCAAAGTCATACTCCCCACG 3751190 Query 76254 CTAT-CACAAACATATTA----AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308 || | || || | || |||| || || | ||| ||||| |||||||||| Sbjct 3751191 AGATGCGTCGACGTAAGAGGGGAGTGCTAGCGAAGCCAAATTGCAAACTGCTACCTCATC 3751250 Query 76309 AGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATT 76368 | | ||| | | || || ||||| ||||| | || || || ||||| Sbjct 3751251 TGGTGCAGTATACTCGACAATTTCGGTGCAGAGATTCGAGCTGCGAATTGTGCCGAGATT 3751310 Query 76369 TTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428 | |||||||||||| |||||| | ||| || || || | || || | || || || Sbjct 3751311 CTTTTGGTTGCTCTTGCGGTTACACGCGTCTTTGTACAGCATGAAGGGGTTGCCGGTCTC 3751370 Query 76429 AATCTGTGATTCGATAATAGA 76449 |||| | ||||| ||| || Sbjct 3751371 CGTCTGGGCTTCGAGAATTGA 3751391 >seq1 Length=10671843 Score = 89.7 bits (98), Expect = 7e-13 Identities = 225/336 (67%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 46850 TTGTTTCTATAGCATTAAAGAGAAA-GtttttttCATCACTATCTTTAACATATGTATCT 46908 |||| || ||||||| ||||||| | ||| || | || || || | |||||| || Sbjct 3822988 TTGTGTCGATAGCATCAAAGAGATACGTTCGTTGCTTCTGC-TCCTTGATATATGTGTCG 3822930 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | ||| || | || || || ||||| || || ||||| || ||||| || Sbjct 3822929 ATGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAG 3822870 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 |||| ||| |||| || || || || || || || ||| | ||||| || || Sbjct 3822869 CATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACG 3822810 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--G 47086 || ||||| ||||||||||| || | || || ||| || || ||| ||| | Sbjct 3822809 ATACCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTCGTCG 3822750 Query 47087 T--AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144 | |||| | || ||||| || | | |||||| || | || | ||||| || ||||| Sbjct 3822749 TTGAGTCTG-TTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCA 3822691 Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||||| || || || || || ||||| | ||| || Sbjct 3822690 GAATGATGCTTCAGCCTTCTTGTACATCTGCCAGAT 3822655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934337618240