Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 183 6e-41 seq1 134 3e-26 seq6 109 1e-18 >seq2 Length=7009248 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| ||||| |||| || || ||||| ||||||||||||||||| ||| Sbjct 3059631 ACCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACT 3059572 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || | || || ||||| |||||||| || |||||||| || Sbjct 3059571 CAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 3059512 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| |||||||||||||| | || ||| | ||||| ||||| || | |||||| Sbjct 3059511 GATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGAC 3059452 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || || || ||||| || || | ||||| ||||| ||||||||| Sbjct 3059451 TTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || | ||| |||| ||| | ||||| || || ||||||||||| || | Sbjct 3059859 ACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3059800 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| ||||||||||| || || ||||| ||||| |||||||| || ||||| ||| Sbjct 3059799 CAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGG 3059740 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||| ||||| |||||||| ||| ||| || | || || ||||| ||| || | Sbjct 3059739 GATACCCTCTTTGTCCTGGATCTT-GCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAA 3059681 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||||||||| || || | ||||| || || |||||||| Sbjct 3059680 CTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | ||| ||| ||||| ||||||||||||| Sbjct 3059175 ACCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 3059116 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || |||||||||||||| || || || || || Sbjct 3059115 CAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGG 3059056 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| || ||||| | ||| || Sbjct 3059055 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCAC 3058996 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||||| ||||| || || | ||||| || Sbjct 3058995 CTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCAC 3058960 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || || ||||||||||| | Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || || || || || || |||||||| || || || || ||| Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| | || || ||||||| |||||||||| || || Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGT 3058689 >seq1 Length=10671843 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||| || ||||||||||| | || || || ||||||||| Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| || || || |||||||| ||||| || | ||| || | ||| Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | |||||| ||||| ||||| ||||||||||| | ||||| ||||| Sbjct 8978361 ATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 8978419 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264 || ||| | |||||| ||| | || ||||| || | ||| ||| |||||| |||||| Sbjct 3823356 GAGGCTCTACCTTGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCAATACATCGAA 3823415 Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324 ||||| || |||||| | || | || || || || |||| || ||| | | || Sbjct 3823416 TTCGTGGCAGATCGTCTACTCCTAGCTCTCGGTAACCAGAAGTACTACAACGCGACAAAT 3823475 Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384 || |||| || |||||| || ||| | || || || ||||||||||| ||||| Sbjct 3823476 CCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGACCAACTTCTTCGAGAAGCGG 3823535 Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410 || | || || || | | ||||||| Sbjct 3823536 GTTGGTGACTACCAGAAGGCCGGTGT 3823561 >seq6 Length=2243500 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| ||||| |||||||||||||| | Sbjct 1182107 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1182166 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || ||||| || || || ||||||| || |||||||| || Sbjct 1182167 AGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGG 1182226 Query 282993 ATACCCTCCTTGTCT 283007 ||||| ||||||||| Sbjct 1182227 ATACCTTCCTTGTCT 1182241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739106120578