Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2 183 6e-41
seq1 134 3e-26
seq6 109 1e-18
>seq2
Length=7009248
Score = 183 bits (202), Expect = 6e-41
Identities = 178/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| ||||| ||||| |||| || || ||||| ||||||||||||||||| |||
Sbjct 3059631 ACCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACT 3059572
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| || || | || || ||||| |||||||| || |||||||| ||
Sbjct 3059571 CAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 3059512
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||| |||||||||||||| | || ||| | ||||| ||||| || | ||||||
Sbjct 3059511 GATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGAC 3059452
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||| || || || ||||| || || | ||||| ||||| |||||||||
Sbjct 3059451 TTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
Score = 163 bits (180), Expect = 6e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || | ||| |||| ||| | ||||| || || ||||||||||| || |
Sbjct 3059859 ACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3059800
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||| ||||||||||| || || ||||| ||||| |||||||| || ||||| |||
Sbjct 3059799 CAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGG 3059740
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||||||| ||||| |||||||| ||| ||| || | || || ||||| ||| || |
Sbjct 3059739 GATACCCTCTTTGTCCTGGATCTT-GCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAA 3059681
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| | ||||||||||| || || | ||||| || || ||||||||
Sbjct 3059680 CTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| || || || | ||| ||| ||||| |||||||||||||
Sbjct 3059175 ACCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 3059116
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || |||||||| || || || |||||||||||||| || || || || ||
Sbjct 3059115 CAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGG 3059056
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| || || || | ||||| || ||||| | ||| ||
Sbjct 3059055 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCAC 3058996
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| | ||||| ||||| || || | ||||| ||
Sbjct 3058995 CTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCAC 3058960
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || || || || |||| || | ||| || || || ||||||||||| |
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| || || || || || || || |||||||| || || || || |||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||| || ||||| | || || ||||||| |||||||||| || ||
Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| ||||| || ||
Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGT 3058689
>seq1
Length=10671843
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | ||| || ||||||||||| | || || || |||||||||
Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| || || || |||||||| ||||| || | ||| || | |||
Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| | |||||| ||||| ||||| ||||||||||| | ||||| |||||
Sbjct 8978361 ATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 8978419
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| | |||||| ||| | || ||||| || | ||| ||| |||||| ||||||
Sbjct 3823356 GAGGCTCTACCTTGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCAATACATCGAA 3823415
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
||||| || |||||| | || | || || || || |||| || ||| | | ||
Sbjct 3823416 TTCGTGGCAGATCGTCTACTCCTAGCTCTCGGTAACCAGAAGTACTACAACGCGACAAAT 3823475
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| |||| || |||||| || ||| | || || || ||||||||||| |||||
Sbjct 3823476 CCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGACCAACTTCTTCGAGAAGCGG 3823535
Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410
|| | || || || | | |||||||
Sbjct 3823536 GTTGGTGACTACCAGAAGGCCGGTGT 3823561
>seq6
Length=2243500
Score = 109 bits (120), Expect = 1e-18
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || ||||| || | ||| ||||| |||||||||||||| |
Sbjct 1182107 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1182166
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| || ||||| || || || ||||||| || |||||||| ||
Sbjct 1182167 AGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGG 1182226
Query 282993 ATACCCTCCTTGTCT 283007
||||| |||||||||
Sbjct 1182227 ATACCTTCCTTGTCT 1182241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739106120578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |