Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 8e-28
seq1 105 5e-18
seq6 84.2 2e-11
>seq2
Length=7009248
Score = 138 bits (152), Expect = 8e-28
Identities = 151/199 (76%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| ||| |||||||| |||||||| || | || || | || ||
Sbjct 3059156 ACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCA 3059097
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| |||||||||||||| ||||||||||||| ||| | || ||||| |||
Sbjct 3059096 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 3059037
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| || | |||||||||||||| || || ||||
Sbjct 3059036 ATCTTAGCCTTGACATTGT--CGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCT 3058979
Query 44307 TTCCCGTGAGGGTCTTCAC 44325
|||| ||||| ||||||||
Sbjct 3058978 TTCCAGTGAGCGTCTTCAC 3058960
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| | |||||||| ||||||||||||||||| ||| || |||| |||
Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| ||||| |||||||| ||||| || |||| || | ||| || || ||
Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGG 3059493
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||| | | | || ||||| | ||||| || |||| ||| || |||||
Sbjct 3059492 ATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTC 3059433
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| |||||||| |||||
Sbjct 3059432 CCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404
Score = 125 bits (138), Expect = 5e-24
Identities = 164/221 (74%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177
|| || | ||||| || || ||||||||||| |||||||||||||| | | ||| |
Sbjct 3059849 AGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCG- 3059791
Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237
|| | || |||||||||||||| ||||| |||||||||||||| || | || | ||| |
Sbjct 3059790 GC-CATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCT 3059732
Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACC 44296
| || ||| ||||| ||| || ||| | || ||||||| || || ||||
Sbjct 3059731 CTTTGTCCTGGATCTTGCTCTT-AACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAG 3059673
Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| || || ||||| || ||||| |||||
Sbjct 3059672 GTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || ||| || || ||||||||||||| ||| | | | || |||
Sbjct 3059384 ACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCC 3059325
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| |||||||| || | |||||| ||||| | || | ||||| || ||| |
Sbjct 3059324 AGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGT 3059265
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | |||||||| | || || || || | ||||| |||||
Sbjct 3059264 ATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTG 3059205
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| |||||||| |||||
Sbjct 3059204 CCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 98.7 bits (108), Expect = 7e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| |||||| || |||||||| || | || || |||| ||
Sbjct 3058873 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCG 3058814
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || |||||||| ||||||||||| | || | |||||||| |||
Sbjct 3058813 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 3058754
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||| | || |||||||| | || || |||||
Sbjct 3058753 ATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTG 3058694
Query 44309 CCCGTGA 44315
|| ||||
Sbjct 3058693 CCGGTGA 3058687
>seq1
Length=10671843
Score = 105 bits (116), Expect = 5e-18
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| || | || |||| |||||| || |||||||
Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | |||||||| ||| || || || || |||
Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || |||||| ||||| ||||| | || || ||||| |||||||||||||| ||
Sbjct 8978359 --CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 8978416
Query 44326 GAAG 44329
||||
Sbjct 8978417 GAAG 8978420
>seq6
Length=2243500
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| || | ||| | || ||||||||| || ||| ||| || ||||||||||| ||||
Sbjct 1182106 TCCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1182165
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
||| ||| | || || || ||||| || || ||||||| ||||| || || | ||
Sbjct 1182166 GAGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGG 1182225
Query 44230 CACACCTTCCTTTTCCGTTAT 44250
| ||||||||| || || ||
Sbjct 1182226 GATACCTTCCTTGTCTGTGAT 1182246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990369288319
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |