Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 138 8e-28 seq1 105 5e-18 seq6 84.2 2e-11 >seq2 Length=7009248 Score = 138 bits (152), Expect = 8e-28 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||||| |||||||| || | || || | || || Sbjct 3059156 ACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCA 3059097 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| ||||||||||||| ||| | || ||||| ||| Sbjct 3059096 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 3059037 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || | |||||||||||||| || || |||| Sbjct 3059036 ATCTTAGCCTTGACATTGT--CGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCT 3058979 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 |||| ||||| |||||||| Sbjct 3058978 TTCCAGTGAGCGTCTTCAC 3058960 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| | |||||||| ||||||||||||||||| ||| || |||| ||| Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| |||||||| ||||| || |||| || | ||| || || || Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGG 3059493 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | || ||||| | ||||| || |||| ||| || ||||| Sbjct 3059492 ATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTC 3059433 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 3059432 CCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404 Score = 125 bits (138), Expect = 5e-24 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177 || || | ||||| || || ||||||||||| |||||||||||||| | | ||| | Sbjct 3059849 AGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCG- 3059791 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 || | || |||||||||||||| ||||| |||||||||||||| || | || | ||| | Sbjct 3059790 GC-CATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCT 3059732 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACC 44296 | || ||| ||||| ||| || ||| | || ||||||| || || |||| Sbjct 3059731 CTTTGTCCTGGATCTTGCTCTT-AACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAG 3059673 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| || || ||||| || ||||| ||||| Sbjct 3059672 GTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||| || || ||||||||||||| ||| | | | || ||| Sbjct 3059384 ACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCC 3059325 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||| || | |||||| ||||| | || | ||||| || ||| | Sbjct 3059324 AGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGT 3059265 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||| | || || || || | ||||| ||||| Sbjct 3059264 ATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTG 3059205 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 3059204 CCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176 Score = 98.7 bits (108), Expect = 7e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| || |||||||| || | || || |||| || Sbjct 3058873 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCG 3058814 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| ||||||||||| | || | |||||||| ||| Sbjct 3058813 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 3058754 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||| | || || ||||| Sbjct 3058753 ATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTG 3058694 Query 44309 CCCGTGA 44315 || |||| Sbjct 3058693 CCGGTGA 3058687 >seq1 Length=10671843 Score = 105 bits (116), Expect = 5e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || |||| |||||| || ||||||| Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | |||||||| ||| || || || || ||| Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || |||||| ||||| ||||| | || || ||||| |||||||||||||| || Sbjct 8978359 --CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 8978416 Query 44326 GAAG 44329 |||| Sbjct 8978417 GAAG 8978420 >seq6 Length=2243500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||||||||| || ||| ||| || ||||||||||| |||| Sbjct 1182106 TCCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1182165 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| ||| | || || || ||||| || || ||||||| ||||| || || | || Sbjct 1182166 GAGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGG 1182225 Query 44230 CACACCTTCCTTTTCCGTTAT 44250 | ||||||||| || || || Sbjct 1182226 GATACCTTCCTTGTCTGTGAT 1182246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990369288319