Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 5e-30
seq1 127 5e-24
seq6 84.2 5e-11
>seq2
Length=7009248
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || || |||||||| || || ||||||
Sbjct 3059179 CAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCAGAC 3059238
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| ||||| |||||||| ||||| ||||| || ||
Sbjct 3059239 ACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAACAG 3059298
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || ||||| || ||||| || ||||| ||||| ||| ||||||| ||| |
Sbjct 3059299 CGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAACATT 3059358
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| ||||| || || |||||
Sbjct 3059359 CAGAAAGAGTCAACCCTCCACCTTGT 3059384
Score = 125 bits (138), Expect = 2e-23
Identities = 140/186 (75%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||| |||||||| || ||||||||||| || |||||
Sbjct 3058687 TCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGT 3058746
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| ||||| || || ||||| ||||| || | |||||||| || |
Sbjct 3058747 CCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCA 3058806
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||||||||| || | ||||| | || || ||| | || || || || || || |
Sbjct 3058807 AGCAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTC 3058866
Query 178123 ATCTTG 178128
| ||||
Sbjct 3058867 A-CTTG 3058871
Score = 123 bits (136), Expect = 6e-23
Identities = 153/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || || || || || || ||| ||||||
Sbjct 3059407 CAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCAGAC 3059466
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||
Sbjct 3059467 ACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAACAG 3059526
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||| || ||| | ||||| || |||| || ||||| ||| ||
Sbjct 3059527 CGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAACATC 3059586
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|||||||| ||| |||| |||| ||
Sbjct 3059587 CAAAAAGAGAGCACATTGCA-CTTGGTT 3059613
Score = 111 bits (122), Expect = 4e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || ||||| ||||||||| | || || || || || |||
Sbjct 3059635 CAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCCGAC 3059694
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||| ||||||||||| || ||||| |||||||||||
Sbjct 3059695 ACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCAGCAG 3059754
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || || || ||||| || ||||| | || | | ||||| ||| ||
Sbjct 3059755 CGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAACATC 3059814
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || || || ||||||
Sbjct 3059815 CAGAAGGAGAGCACCCTGCAT 3059835
>seq1
Length=10671843
Score = 127 bits (140), Expect = 5e-24
Identities = 138/182 (76%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986
||||| || || ||||| || || || |||||||||||||| ||| ||| |||||
Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGC---GACACA 8978363
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
||||| || |||||| || || |||||||| ||||| ||||| ||||||||||| |||
Sbjct 8978362 ATCGACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGA 8978303
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
| ||||| || || || ||| | || ||||| | || ||| |||| || ||| ||||
Sbjct 8978302 TTGATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAG 8978243
Query 178107 AA 178108
||
Sbjct 8978242 AA 8978241
>seq6
Length=2243500
Score = 84.2 bits (92), Expect = 5e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| ||||| ||||| || ||||| || || || |||||||| || || || ||||||
Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| | || || |||| || ||| |||| ||||| || || || || || ||
Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGT 1182125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731092040358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |