Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq1 127 5e-24 seq6 84.2 5e-11 >seq2 Length=7009248 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || || |||||||| || || |||||| Sbjct 3059179 CAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCAGAC 3059238 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| |||||||| ||||| ||||| || || Sbjct 3059239 ACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAACAG 3059298 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| || ||||| ||||| ||| ||||||| ||| | Sbjct 3059299 CGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAACATT 3059358 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| ||||| || || ||||| Sbjct 3059359 CAGAAAGAGTCAACCCTCCACCTTGT 3059384 Score = 125 bits (138), Expect = 2e-23 Identities = 140/186 (75%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| |||||||| || ||||||||||| || ||||| Sbjct 3058687 TCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGT 3058746 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| ||||| || || ||||| ||||| || | |||||||| || | Sbjct 3058747 CCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCA 3058806 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||||||||| || | ||||| | || || ||| | || || || || || || | Sbjct 3058807 AGCAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTC 3058866 Query 178123 ATCTTG 178128 | |||| Sbjct 3058867 A-CTTG 3058871 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || || || || || || ||| |||||| Sbjct 3059407 CAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCAGAC 3059466 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || |||||||| || ||||| || ||||| || Sbjct 3059467 ACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAACAG 3059526 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || ||| | ||||| || |||| || ||||| ||| || Sbjct 3059527 CGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAACATC 3059586 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||| ||| |||| |||| || Sbjct 3059587 CAAAAAGAGAGCACATTGCA-CTTGGTT 3059613 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || ||||| ||||||||| | || || || || || ||| Sbjct 3059635 CAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCCGAC 3059694 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| ||||||||||| || ||||| ||||||||||| Sbjct 3059695 ACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCAGCAG 3059754 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||||| || ||||| | || | | ||||| ||| || Sbjct 3059755 CGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAACATC 3059814 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || |||||| Sbjct 3059815 CAGAAGGAGAGCACCCTGCAT 3059835 >seq1 Length=10671843 Score = 127 bits (140), Expect = 5e-24 Identities = 138/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 ||||| || || ||||| || || || |||||||||||||| ||| ||| ||||| Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGC---GACACA 8978363 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || |||||| || || |||||||| ||||| ||||| ||||||||||| ||| Sbjct 8978362 ATCGACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGA 8978303 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | ||||| || || || ||| | || ||||| | || ||| |||| || ||| |||| Sbjct 8978302 TTGATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAG 8978243 Query 178107 AA 178108 || Sbjct 8978242 AA 8978241 >seq6 Length=2243500 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| ||||| || ||||| || || || |||||||| || || || |||||| Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || || |||| || ||| |||| ||||| || || || || || || Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGT 1182125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731092040358