Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3688 152 6e-32 >seq3688 Length=146739 Score = 152 bits (168), Expect = 6e-32 Identities = 586/907 (65%), Gaps = 24/907 (3%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| |||||||| | |||| ||| || ||| ||| | ||||| | | | Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || |||| | || || || |||||||| ||||| || |||||||||| | || Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 |||||| | | | |||||| || || |||||| | || | ||| | | Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||| | ||||| || || | ||| || | | | || ||||| ||||| || || Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | ||||| |||||||| || | || | | ||| || | ||| || || || Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 | || || || |||| || || || |||| || ||| | ||| || || Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || || ||| | || ||||| | ||||| || || || || ||||| || || Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 || || || || |||||| || || || || | || || | | ||| || Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 || || || | || || || ||||| || || |||||| ||| | ||||| || || Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668 Query 54490 CTCGAT-AGCT----GA-GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| | | || || ||| || |||| |||| || || ||||||||||||| Sbjct 23669 CTCAAGGACCTTCTCGACGTC-ATCTCCCCA-GATG----CCAACAGCGACACGCATTAT 23722 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||| || ||| ||| |||| || | |||| || || || | Sbjct 23723 CATGTGTTGAGGCCTCTCAGCGACCTTGCCGTCGAGACGAAGCAGATAAGACCGCTCGAG 23782 Query 54604 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661 ||| || ||||| || || | ||| ||||| ||||| || || | || | || ||| Sbjct 23783 AGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCTCGATCATAGACGATGGCAGAATTG 23840 Query 54662 AGTTTATCCTTATATTTGT-TAACTACA-TC-CATGGTAATACTT-GAAATAATCGGAGA 54717 | | ||| | ||| | | |||| || | || | || || || || || | Sbjct 23841 AACT----CTTCTGCGTGTCTCATTACAGTCTCGTGTGTTTGCTGCGATATCATAGGTGC 23896 Query 54718 ATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAG 54777 | || ||||| |||||||| |||| |||| ||| | ||| | ||| | Sbjct 23897 CGGCCTCTTGTTTTTGGGATTGACGTAGTGGAATAGATCTGAGACTACTGCCGAAAACTG 23956 Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || |||| ||| |||||||||||||| ||||| | ||| || |||||||||||||| Sbjct 23957 TTTCTTCGTTTGTTTATGTAGATTTGATACAGCTATACGAGCCGCGAGAATGGCATAATC 24016 Query 54838 CGGATGT 54844 || ||| Sbjct 24017 GGGGTGT 24023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692722865680