Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3328 116 2e-21 seq256 109 4e-19 seq1350 91.5 1e-13 >seq3328 Length=87304 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||||| || |||| ||| || || || || || || |||||||| || | Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||||||||| || ||||| || | |||||||||||| || Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | | | | |||| || | |||||||| Sbjct 25924 ATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACT 25865 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || || || || || || || || ||||| ||||| Sbjct 25864 TCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | ||| |||||||| |||||||||||||| Sbjct 25817 TCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGA 25758 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || |||| |||||||||||||| ||||| ||||| ||||| || Sbjct 25757 AAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGG 25698 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || |||||| ||| | || | | |||| || | ||||||||| Sbjct 25697 GATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGAC 25638 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 25637 CTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| ||||| | ||| ||| || || |||||||||||||| Sbjct 25588 CCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAG 25529 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || | |||||||| || || Sbjct 25528 AGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 25469 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | | || | ||| | ||||| || Sbjct 25468 ATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACC 25409 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 |||| |||||||| || || ||||| || || |||| Sbjct 25408 TCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGACAA 25372 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || ||||| ||||||||||| | || || |||||||| |||||||| || ||| Sbjct 26272 CCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGAC 26213 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||| |||||| || || || || | ||||||||||| || Sbjct 26212 AAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGA 26153 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCG----ATTC 34338 | | ||| || || || | ||||| | || | |||| | | |||| || Sbjct 26152 ATACCCTCTTTATC--CTGAATCTTGCTCTTGA--CGTTATCAATTGTGTCGGAGCTCTC 26097 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || || || || ||||| || |||||||||||||| Sbjct 26096 AACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 >seq256 Length=121632 Score = 109 bits (120), Expect = 4e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| | || |||||||||||||||||||| || Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | ||| |||||||| || | || |||||||| ||||| ||| | || | | Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||| |||||||||| || | |||||||| || || || ||||| || || ||| Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAG 86588 >seq1350 Length=581194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||||| |||||||||||| | || || ||||| || ||||||||||| Sbjct 375884 TCCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 375943 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | |||||||| ||||| ||||| ||||| ||||| || Sbjct 375944 GAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 376003 Query 34282 CACGCTCTCCTTGTCGGC 34299 | || |||||||| || Sbjct 376004 GATGCCTTCCTTGTCTGC 376021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323056679420960