Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3688 255 5e-63 seq1271 122 8e-23 seq3328 96.9 3e-15 seq256 93.3 4e-14 >seq3688 Length=146739 Score = 255 bits (282), Expect = 5e-63 Identities = 492/721 (68%), Gaps = 10/721 (1%) Strand=Plus/Plus Query 23264 GCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || ||||||||| | ||||| ||| || ||||| || || | || | ||||| | ||| Sbjct 23127 GCTTCAAATTCGTCTCCGTACACA-TCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAG 23185 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| || || || || || ||||||||||||| || |||| ||||| | Sbjct 23186 TGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAA 23245 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || ||||| ||||| || ||||| || ||| ||||| ||| |||||||| || Sbjct 23246 GAATAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTC 23305 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || || ||||| ||||| ||||||| |||||||| || || | ||| || || Sbjct 23306 GAAGACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACC 23365 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 || || ||||| || | || ||||||||| | || | ||||| ||||| | ||||| Sbjct 23366 ACCTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTT 23425 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 || | ||| | ||| || | ||| || | ||||| | |||| || | Sbjct 23426 CGAGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAG 23485 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || |||||||| ||| ||||| |||| ||||| |||| ||||||||||| || Sbjct 23486 CCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACC 23545 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 || |||||||||||||| | | || | ||| ||||| | || || | || || || Sbjct 23546 TTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGT 23605 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | | || ||| || || ||| |||||| || || ||| | ||||| ||||| || Sbjct 23606 ACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATA 23665 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | || | ||| ||||| || || | ||||| ||||| ||||| Sbjct 23666 GGTCTCAAGGACCTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCAT 23725 Query 23863 GTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAA-CAGATATGAACGTTGCA 23918 || |||||| |||| ||||| || || || | ||| |||||| || || | | Sbjct 23726 GTGTTGAGGCCTCTCAGCGACCTTGCCGTCGAGA----CGAAGCAGATAAGACCGCTCGA 23781 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || || || || || || | ||||| || || ||||| | || ||||| ||||| | Sbjct 23782 GAGTCTTGAAACCGAAGTATTGGTAGTTGAAATCTCGATCATAGACGATGGCAGAATTGA 23841 Query 23979 A 23979 | Sbjct 23842 A 23842 >seq1271 Length=109735 Score = 122 bits (134), Expect = 8e-23 Identities = 344/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 ||||| ||||| ||| | ||||||||||| || | | | || ||||| | | Sbjct 95187 AAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTCTACCTTCGCTCAACGC 95246 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || ||||| || || || ||||| ||||| || |||||| |||| || Sbjct 95247 CTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTTTGCATCAATTTTC 95306 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || || ||||| |||||||| || ||||| | || || ||| Sbjct 95307 TGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGAACTTATCTCTCGC 95366 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 || ||||| || || ||||| ||||| ||||| | | |||| ||| || ||||| Sbjct 95367 GATGAGGGGCTTCACACTGACTTTGCCTGCCTCCTCT--TCTCCCAT--CTAAACAACCG 95422 Query 58155 ACGCGGGATCGCA---TCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 | | | ||| | || |||| ||||||| ||||| ||| | ||||| | |||| Sbjct 95423 TCCCACCA-AGCAGGCTGTTCAGGACGTTATCACTGAGGCTGTCACTATCGAGCAAGAGT 95481 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 || | || || || || || || |||| ||||||||| | ||||||| | | Sbjct 95482 TTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTTTGATGAAGCAAT 95541 Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAA 58327 | || || ||||| ||||| | ||| | || | || | ||| || | ||||| Sbjct 95542 ATATCGAATTTGTGGCCGATCGTCTTCTCCTAGCTCTAGGCAACCAGA-AGT-ACTACAA 95599 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 | || || ||||| || || ||| | ||| || | | |||||||| ||||| || Sbjct 95600 CTCGTCGAACCCGTTCGACTTCATGGAGTCGATATCATTGGCTGGCAAGACCAACTTCTT 95659 Query 58388 CGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||| || ||| | || ||||| || ||| || ||| Sbjct 95660 CGAGAAGCGTGTTGGTGACTATCAGAAGGCCGGTGTTATG 95699 >seq3328 Length=87304 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || || || ||||| || | || || ||| | || Sbjct 25818 ATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATCA 25877 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | || ||| | | ||||||| || | || || ||||| Sbjct 25878 GACACGATTGACAACGTTAAGTCAAAGATTCAAG-ACAAGGAGGGTATCCCACCAGACCA 25936 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || |||||||| ||| ||| |||| ||||| || Sbjct 25937 GCAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACACTGAGTGATTACAA 25996 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || | || |||| ||| | ||| | || |||| Sbjct 25997 CATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGGTA 26046 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || ||||||||| | || ||||| ||| Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCC 26105 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| || || || | || || |||||| Sbjct 26106 GACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAG 26165 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| |||| || |||| || ||||| ||| Sbjct 26166 CAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAAC 26225 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || ||||| || || || ||||| ||||| || | |||||| Sbjct 26226 ATCCAGAAAGAGAGCACCCTGCACCTGGTGCTTAGGCTCCGTGGCGGT 26273 >seq256 Length=121632 Score = 93.3 bits (102), Expect = 4e-14 Identities = 121/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 31182 TTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACG 31241 ||||||| |||| || ||||| ||||||||||| || || || |||||| |||| | Sbjct 86575 TTGAATCCAACA-GC-----TTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGG 86628 Query 31242 TTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGC 31301 | ||| || ||||| |||| | ||||| | || ||||||||||||| | | Sbjct 86629 TCGAATCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCC 86688 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | || |||||||| || | || ||||| ||||| |||||||| || Sbjct 86689 CACCGGACCAGCAACGGTTGATCTTCGCAGGCAAGCAGTTGGAGGA 86734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744719036720