Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq3688 87.8 4e-12
>seq3688
Length=146739
Score = 87.8 bits (96), Expect = 4e-12
Identities = 173/251 (69%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGC-CGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850
||||| || ||||| ||||| | || | || | ||| || || || ||||| |||||
Sbjct 23493 CCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAG-GTGTCGTAGATACCTTCAAT 23551
Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGA-GGAAAGTTGGGGTGTGACTGTTCCAC 94909
||| || |||| | | | | ||||||||||| | || | || |||| || |||
Sbjct 23552 GCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTG-GAGTACCAG 23610
Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969
|| || || || ||||| || ||||| ||||| | ||||| |||| ||| || |
Sbjct 23611 CGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGTCT 23670
Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029
||| ||| | || ||| ||| ||||| ||||| |||||||| ||||||| |
Sbjct 23671 CAAGGACCTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCATGTGTT 23730
Query 95030 GAGGGCGCTCA 95040
|||| | ||||
Sbjct 23731 GAGGCCTCTCA 23741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989534665835905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |