Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3688 87.8 4e-12 >seq3688 Length=146739 Score = 87.8 bits (96), Expect = 4e-12 Identities = 173/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGC-CGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 ||||| || ||||| ||||| | || | || | ||| || || || ||||| ||||| Sbjct 23493 CCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAG-GTGTCGTAGATACCTTCAAT 23551 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGA-GGAAAGTTGGGGTGTGACTGTTCCAC 94909 ||| || |||| | | | | ||||||||||| | || | || |||| || ||| Sbjct 23552 GCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTG-GAGTACCAG 23610 Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969 || || || || ||||| || ||||| ||||| | ||||| |||| ||| || | Sbjct 23611 CGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGTCT 23670 Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 ||| ||| | || ||| ||| ||||| ||||| |||||||| ||||||| | Sbjct 23671 CAAGGACCTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCATGTGTT 23730 Query 95030 GAGGGCGCTCA 95040 |||| | |||| Sbjct 23731 GAGGCCTCTCA 23741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989534665835905