Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq1765 165 3e-36 >seq1765 Length=689 Score = 165 bits (182), Expect = 3e-36 Identities = 197/265 (74%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 41873 CGGCTGCACCCAAATCGGCTGATTAGACAGCATGAACGTCTCGCCGGTCATGGCGAGCAG 41932 |||| | ||||| |||||| | || |||||||| ||||||||| | |||||||| Sbjct 405 CGGCCGAACCCAGATCGGCAGGGCGGAAAGCATGAAGCTCTCGCCGGACCACGCGAGCAG 346 Query 41933 CAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCCGCATCCGGAGGTACCGCGTTCCC 41992 ||| || || |||| |||||| ||||| |||||||| || || || |||||||| || Sbjct 345 CAGCGTCTTTGCCATCGTGTCGGCAATCGCCGTCGCCGCGTCGGGCGGAACCGCGTTGCC 286 Query 41993 GATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCGAGGGTGAATAT-CTCGTCTGGAT 42051 ||||||||| |||||| | ||||||| ||||||||| | | || | || ||||| | Sbjct 285 GATGCGCTCGCGCCAATTCGCATCGGACAGGCCGTCGA-GTTCAAGCTGTTCCTCTGGGT 227 Query 42052 CAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGTGAACGGACGATGCCACGTGCCAT 42111 | ||||||| |||||| || || | ||| |||||||| || || |||||||| | | Sbjct 226 CCACGAGGCCCTGCAAAGCGGCCAGTTCGTACGTGGTGAAAGGCCGGTGCCACGTTTCGT 167 Query 42112 CAAGCGCACGGATTACGGCAACGAG 42136 | | ||||| ||||| ||||| Sbjct 166 CTGGGCTGCGGATGACGGCCACGAG 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183601116203676