Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1271 86.0 9e-12 >seq1271 Length=109735 Score = 86.0 bits (94), Expect = 9e-12 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | |||||||| ||||| | || || || ||||| | |||||| | || || || Sbjct 94789 TGGCAGATGTACAAGAAGGCCGAAGCGTCATTCTGGACCGCGGAAGAGATTGACCTCTCG 94848 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 || || | |||||||| | | || | | || ||| || | || || || || Sbjct 94849 AAAGATTGGCACGATTGGAACAACCGACTCAACGATGATGAACGCTATTTCATCTCCCAT 94908 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | ||||||||||| | || ||||| ||||||||||| || || ||||| || || Sbjct 94909 GTCCTTGCCTTCTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTCGTTGA-GCGCTT 94967 Query 125201 CTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTG 125259 | | | |||| | || || |||| ||||| ||||| || || |||||||| | Sbjct 94968 CAGTGGCGAAGTTCA-GATACCTGAGGCACGATGCTTCTACGGTTTTCAGATCATGATGG 95026 Query 125260 AGAACGTGCACTCGGAAATGTACTC 125284 ||||| | ||||| || | ||||| Sbjct 95027 AGAACATCCACTCCGAGACCTACTC 95051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741023156733160