Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 113 4e-20
>seq3328
Length=87304
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||||| || || || || | ||| ||||| || ||| | ||||||
Sbjct 26255 CACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTC 26196
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| ||||| ||||||| || | ||||| ||||| |||||||| ||||| || |
Sbjct 26195 CAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTG 26136
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || ||||||| | | ||||| | | || || || | ||||| || ||
Sbjct 26135 AATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTT 26076
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||||||| || ||||||||||||||
Sbjct 26075 TCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||||||||| || |||||||| | ||| ||||| |||| || | ||||||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| ||| || || | ||||| || | ||||| ||||| || ||||| || ||||| | |
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| |||| ||| ||| | | | ||||| | ||||| || | ||| || || |||
Sbjct 25906 ATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTT 25847
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| || || || ||||| |||||
Sbjct 25846 CCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| | ||| | ||| ||||||||||| | ||| || ||| | ||| ||||||
Sbjct 25571 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTC 25512
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || ||| | ||||| || | ||||||||||||||||| || |||||||| |
Sbjct 25511 AAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTG 25452
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | ||| || || | || || || | |||||||| ||
Sbjct 25451 GATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTT 25392
Query 94978 TCCAGTAAGAGTTTTCACAA 94997
||||| || || || ||||
Sbjct 25391 CCCAGTGAGGGTCTTGACAA 25372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448269396236760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |