Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1576 95.1 2e-15 seq3489 93.3 7e-15 >seq1576 Length=130919 Score = 95.1 bits (104), Expect = 2e-15 Identities = 82/99 (83%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || ||||| ||||| || || Sbjct 102857 GCCAAGCGTCACCGGAAGAT-TCTTCGTGACAACATCCAGGGCATCACAAAGCCTGCCAT 102799 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || |||||||| || ||||||||| |||| Sbjct 102798 CCGTCGTCTTGCGCGTCGTGGCGGTGTCAAGCGTATCTC 102760 >seq3489 Length=444984 Score = 93.3 bits (102), Expect = 7e-15 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || ||||||||||| || |||||||| || || Sbjct 64078 CGCCAAGCGCCACCGCAAAATCCTCCGCGACAACATCCAAGGCATAACCAAGCCGGCCAT 64019 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 ||| |||||||| ||||||||||| ||||||||| Sbjct 64018 CCGGCGTCTGGCGCGTCGTGGTGGCGTCAAGCGT 63985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071642431463