Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3328 86.0 5e-12 seq1350 82.4 7e-11 >seq3328 Length=87304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | |||||| |||| || || ||||| Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || || || || ||||| || ||||| |||| Sbjct 25650 GACACGATTGA--CAATGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACC 25707 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || || ||||| ||| | || |||| | || | ||| |||| Sbjct 25708 AACAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACA 25767 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | ||||| ||||| || || || || Sbjct 25768 ACATTCAGAAAGAGTCTACCCTCCA 25792 >seq1350 Length=581194 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| || ||||| ||||||||||| | || || |||||||| ||| | ||| Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | ||||| | ||| |||||||| || || || ||||| || || | ||||| Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899 Query 25212 AGGCT 25216 |||| Sbjct 375898 CGGCT 375894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307450909165