Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 86.0 5e-12
seq1350 82.4 7e-11
>seq3328
Length=87304
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || || | |||||| |||| || || |||||
Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || || || ||| || || || || ||||| || ||||| ||||
Sbjct 25650 GACACGATTGA--CAATGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACC 25707
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || || || ||||| ||| | || |||| | || | ||| ||||
Sbjct 25708 AACAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACA 25767
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| ||||| ||||| || || || ||
Sbjct 25768 ACATTCAGAAAGAGTCTACCCTCCA 25792
>seq1350
Length=581194
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||| ||||| || ||||| ||||||||||| | || || |||||||| ||| | |||
Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|| | ||||| | ||| |||||||| || || || ||||| || || | |||||
Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899
Query 25212 AGGCT 25216
||||
Sbjct 375898 CGGCT 375894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433307450909165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |