Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq511 140 7e-28 seq3716 86.0 1e-11 >seq511 Length=40481 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 280158 AACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTC 280217 ||||| || | | |||||||||| | || || || |||||||| ||| | ||||| | Sbjct 33312 AACTCGCGCGTGGCTGTCATTGGAGCTAACGGAGCTGGTAAGTCCACCATGATCAAGCTG 33253 Query 280218 CTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATG 280277 || ||||| ||| || | | ||||| | || |||||||| |||||| |||| | Sbjct 33252 CTCACTGGGGAGCTGGAGACTGCAGAGGGCACTGTGTGGAAGCACCCCAACCTGCGTGTA 33193 Query 280278 GCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAAC 280337 || || || || |||||||| ||||||||||| ||| | |||||||||| ||| || ||| Sbjct 33192 GCCTATGTGGCCCAGCACGCCTTCCACCACATTGAGCAGCACCTGGACAAGACCCCCAAC 33133 Query 280338 CAATACATTCAGTGGCGCTATGCAAGTGGGCAGGA 280372 | |||||| |||||| |||||| ||| |||| Sbjct 33132 GACTACATTGCGTGGCGGTATGCATCTGGCGAGGA 33098 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 ||||| | || || |||||| ||| ||||||||||| || || || ||||| || |||| Sbjct 32075 TGGGTATTGAGCCTGAGTTTGGAACCCACTCTCGCATGCGTGGCCTATCTGGTGGACAGA 32016 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 ||||||| | || | | ||||| ||||| | |||||||| | | || || || | Sbjct 32015 AGGTCAAGGTGGTGCTGGCTGCAGCCATGTGGAACAACCCTCACATCCTGGTCCTGGATG 31956 Query 280798 AGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGC 280846 |||| |||||||| |||||| | || ||| ||||| ||| || ||| Sbjct 31955 AGCCCACCAACTACCTGGACAGGGAATCCCTTGGCGCCCTGGCTGGTGC 31907 Score = 100 bits (110), Expect = 6e-16 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 ||||| ||||| ||||| ||| | | ||||| || ||||||||||||| ||||| || Sbjct 36024 GGTGGCAAGATCCTGCTGAACAATGCTCGCCTGCACCTCAAGCGTGGCAAGCGGTACGGC 35965 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || || |||||||| || || ||| ||| || ||| | ||||||| || || ||| Sbjct 35964 CTGTGTGGCCCCAATGGTGCTGGCAAGTCCACCCTCATGAGGTCCATTGCTAATGGACAG 35905 Query 279504 CTGGAAGGATTTCCTAACGCA--TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCG 279561 ||||| || || || || || ||| | | || |||||||| ||||| ||||||| Sbjct 35904 CTGGACGGCTTCCC--ACCCAAGGACGAGCTGCGTACTGTGTATGTGGAGCATGACATCG 35847 Query 279562 A 279562 | Sbjct 35846 A 35846 >seq3716 Length=408808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || || ||||||||||||||||||||| | |||||||||| | || Sbjct 49756 GTGGGGTCGCTCTCTGGCGGTTGGAAGATGAAGCTGGCCTTGGCTCGCGCCATGTTGATG 49697 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGAC 279800 | |||||||| || ||||| ||||| || || || ||| ||||| Sbjct 49696 GGCGCCGATGTGCTGCTGCTGGATGAACCTACGAATCACTTGGAC 49652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027785558802331