Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 172 1e-37
seq256 150 3e-31
seq511 136 7e-27
seq1350 120 6e-22
>seq3328
Length=87304
Score = 172 bits (190), Expect = 1e-37
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || ||||| || ||||||||||| || ||||||
Sbjct 25588 CCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAG 25529
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||| || | ||||||||||||||| || | | || || || || |||
Sbjct 25528 AGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 25469
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| || ||||| || ||||| ||||| || |||||||| || | |||||| ||
Sbjct 25468 ATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACC 25409
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|||||||||||||| || || ||||||||||||||
Sbjct 25408 TCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGAC 25374
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| | |||| ||| ||||| ||||| |||||
Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||||| || || || |||||||| || ||||| || | | || ||||| |||||
Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||||| ||| ||| || || ||||||| |||||| |||
Sbjct 25924 ATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACT 25865
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| || || || |||||||| |||||||| ||||| || ||||||
Sbjct 25864 TCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817
Score = 170 bits (188), Expect = 4e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || ||||| || | || | ||| || || |||||||| || ||||| || ||||
Sbjct 25818 TTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 25759
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| |||||||||||||| || | ||||| || ||||| ||||| | |||||||| ||||
Sbjct 25758 AAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTG 25699
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
| || |||||||| || || ||||| | |||||| || || ||||||| ||||| |
Sbjct 25698 GGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGA 25639
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 25638 CCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 154 bits (170), Expect = 3e-32
Identities = 157/205 (77%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| || | |||||||| || |||||||| || ||||||||||| || ||
Sbjct 25306 CCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAT 25247
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| |||| || ||||| | ||| || ||||| || || | | || || || || |||
Sbjct 25246 AGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGA 25187
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| |||||||| | |||||| ||||||||||||| || || ||
Sbjct 25186 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACC 25127
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 25126 TCAAGGGTGATGGTCTTGCCAGTGA 25102
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || ||| |||||| |||||||| ||||| || | |||| ||||| ||
Sbjct 26254 ACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTCC 26195
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || || | | || ||||| |||||||| || || || || |||
Sbjct 26194 AGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTGA 26135
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||||| || || ||||| | || |||||||||||||| || |||
Sbjct 26134 ATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTTT 26075
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || |||||||| || ||||||||
Sbjct 26074 CCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
>seq256
Length=121632
Score = 150 bits (166), Expect = 3e-31
Identities = 143/180 (79%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| ||||| | ||||| || |||||||| || ||||| ||
Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | ||| ||||| ||||| |||||||||||||| || ||||| | |||||| |||
Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648
Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| ||| ||||| || || | ||||||||| || ||||| || |||||||||||
Sbjct 86647 ATGGTGTC-GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589
>seq511
Length=40481
Score = 136 bits (150), Expect = 7e-27
Identities = 158/212 (75%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 224956 CTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAG 225015
|||| ||||| ||| || |||||||||||| ||||| | |||||||||| |||||||
Sbjct 33091 CTCCCTGTCCTCGCCAGATGCATACCGCCACGCAATGTAGTCGTTGGGGGTCTTGTCCAG 33150
Query 225016 GTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATG 225075
||| | |||||| |||||||| || |||||||| || || || | |||| |||||| ||
Sbjct 33151 GTGCTGCTCAATGTGGTGGAAGGCGTGCTGGGCCACATAGGCTACACGCAGGTTGGGGTG 33210
Query 225076 CTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGT 225135
||||||||||| |||| | | | ||| || ||||| | |||||| | || |
Sbjct 33211 CTTCCACACAGTGCCCTCTGCAGTCTCCAGCTCCCCAGTGAGCAGCTTGATCATGGTGGA 33270
Query 225136 CTTGCCCGCACCATTGGGGCCAATCAC-GCCA 225166
||| || || || || | ||||| || ||||
Sbjct 33271 CTTACCAGCTCCGTTAGCTCCAATGACAGCCA 33302
Score = 100 bits (110), Expect = 5e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557
|| |||||||| || || | ||| ||| |||| || ||||||||||||| | | |||
Sbjct 31916 AGGGCGCCAAGGGATTCCCTGTCCAGGTAGTTGGTGGGCTCATCCAGGACCAGGATGTGA 31975
Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617
||| | ||||| ||||||| | | ||||| ||| |||||||| || ||||| |||||
Sbjct 31976 GGGTTGTTCCACATGGCTGCAGCCAGCACCACCTTGACCTTCTGTCCACCAGATAGGCCA 32035
Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACC 224655
|| || || ||||| || || || || |||| |||
Sbjct 32036 CGCATGCGAGAGTGGGTTCCAAACTCAGGCTCAATACC 32073
Score = 89.7 bits (98), Expect = 9e-13
Identities = 133/187 (71%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 225767 GACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGG--GGAAGC 225824
|| || || ||||| || ||||| ||||| || || |||| | | || ||||||
Sbjct 35840 GAAGCATCGATGTCATGCTCCACATACACAGTACGCAGCTCGTC--CTTGGGTGGGAAGC 35897
Query 225825 CCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGAC 225884
| |||||||| ||||| ||||| | | | ||||| |||||| || || ||||| |
Sbjct 35898 CGTCCAGCTGTCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCATTGGGGC 35957
Query 225885 CGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCT 225944
| |||||||| | || || ||||||| || ||||| | |||||| |||||||
Sbjct 35958 CACACAGGCCGTACCGCTTGCCACGCTTGAGGTGCAGGCGAGCATTGTTCAGCAGGATCT 36017
Query 225945 TGCCACC 225951
|||||||
Sbjct 36018 TGCCACC 36024
>seq1350
Length=581194
Score = 120 bits (132), Expect = 6e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| ||||| || |||| |||| ||| || |||||||| || ||||| || || |||||
Sbjct 375884 TCCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 375943
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | || ||||| | ||||| |||||||| ||||| | |||||||| |||||
Sbjct 375944 GAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 376003
Query 68354 AATGCCTTCCTTGTCT 68369
|||||||||||||||
Sbjct 376004 GATGCCTTCCTTGTCT 376019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921577574590520
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