Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3328 172 1e-37 seq256 150 3e-31 seq511 136 7e-27 seq1350 120 6e-22 >seq3328 Length=87304 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||| || ||||||||||| || |||||| Sbjct 25588 CCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAG 25529 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | ||||||||||||||| || | | || || || || ||| Sbjct 25528 AGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 25469 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || ||||| || ||||| ||||| || |||||||| || | |||||| || Sbjct 25468 ATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACC 25409 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||||||||||||| || || |||||||||||||| Sbjct 25408 TCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGAC 25374 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| | |||| ||| ||||| ||||| ||||| Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||||| || || || |||||||| || ||||| || | | || ||||| ||||| Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||||| ||| ||| || || ||||||| |||||| ||| Sbjct 25924 ATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACT 25865 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || |||||||| |||||||| ||||| || |||||| Sbjct 25864 TCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | || | ||| || || |||||||| || ||||| || |||| Sbjct 25818 TTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 25759 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | |||||||||||||| || | ||||| || ||||| ||||| | |||||||| |||| Sbjct 25758 AAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTG 25699 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||| || || ||||| | |||||| || || ||||||| ||||| | Sbjct 25698 GGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGA 25639 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 25638 CCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || |||||||| || ||||||||||| || || Sbjct 25306 CCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAT 25247 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || ||||| | ||| || ||||| || || | | || || || || ||| Sbjct 25246 AGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGA 25187 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | |||||| ||||||||||||| || || || Sbjct 25186 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACC 25127 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 25126 TCAAGGGTGATGGTCTTGCCAGTGA 25102 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||| |||||| |||||||| ||||| || | |||| ||||| || Sbjct 26254 ACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTCC 26195 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | | || ||||| |||||||| || || || || ||| Sbjct 26194 AGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTGA 26135 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||| || || ||||| | || |||||||||||||| || ||| Sbjct 26134 ATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTTT 26075 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || |||||||| || |||||||| Sbjct 26074 CCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 >seq256 Length=121632 Score = 150 bits (166), Expect = 3e-31 Identities = 143/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| ||||| | ||||| || |||||||| || ||||| || Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||| ||||| ||||| |||||||||||||| || ||||| | |||||| ||| Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| ||| ||||| || || | ||||||||| || ||||| || ||||||||||| Sbjct 86647 ATGGTGTC-GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589 >seq511 Length=40481 Score = 136 bits (150), Expect = 7e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 224956 CTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAG 225015 |||| ||||| ||| || |||||||||||| ||||| | |||||||||| ||||||| Sbjct 33091 CTCCCTGTCCTCGCCAGATGCATACCGCCACGCAATGTAGTCGTTGGGGGTCTTGTCCAG 33150 Query 225016 GTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATG 225075 ||| | |||||| |||||||| || |||||||| || || || | |||| |||||| || Sbjct 33151 GTGCTGCTCAATGTGGTGGAAGGCGTGCTGGGCCACATAGGCTACACGCAGGTTGGGGTG 33210 Query 225076 CTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGT 225135 ||||||||||| |||| | | | ||| || ||||| | |||||| | || | Sbjct 33211 CTTCCACACAGTGCCCTCTGCAGTCTCCAGCTCCCCAGTGAGCAGCTTGATCATGGTGGA 33270 Query 225136 CTTGCCCGCACCATTGGGGCCAATCAC-GCCA 225166 ||| || || || || | ||||| || |||| Sbjct 33271 CTTACCAGCTCCGTTAGCTCCAATGACAGCCA 33302 Score = 100 bits (110), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 || |||||||| || || | ||| ||| |||| || ||||||||||||| | | ||| Sbjct 31916 AGGGCGCCAAGGGATTCCCTGTCCAGGTAGTTGGTGGGCTCATCCAGGACCAGGATGTGA 31975 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 ||| | ||||| ||||||| | | ||||| ||| |||||||| || ||||| ||||| Sbjct 31976 GGGTTGTTCCACATGGCTGCAGCCAGCACCACCTTGACCTTCTGTCCACCAGATAGGCCA 32035 Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACC 224655 || || || ||||| || || || || |||| ||| Sbjct 32036 CGCATGCGAGAGTGGGTTCCAAACTCAGGCTCAATACC 32073 Score = 89.7 bits (98), Expect = 9e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 225767 GACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGG--GGAAGC 225824 || || || ||||| || ||||| ||||| || || |||| | | || |||||| Sbjct 35840 GAAGCATCGATGTCATGCTCCACATACACAGTACGCAGCTCGTC--CTTGGGTGGGAAGC 35897 Query 225825 CCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGAC 225884 | |||||||| ||||| ||||| | | | ||||| |||||| || || ||||| | Sbjct 35898 CGTCCAGCTGTCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCATTGGGGC 35957 Query 225885 CGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCT 225944 | |||||||| | || || ||||||| || ||||| | |||||| ||||||| Sbjct 35958 CACACAGGCCGTACCGCTTGCCACGCTTGAGGTGCAGGCGAGCATTGTTCAGCAGGATCT 36017 Query 225945 TGCCACC 225951 ||||||| Sbjct 36018 TGCCACC 36024 >seq1350 Length=581194 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| ||||| || |||| |||| ||| || |||||||| || ||||| || || ||||| Sbjct 375884 TCCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 375943 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || ||||| | ||||| |||||||| ||||| | |||||||| ||||| Sbjct 375944 GAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 376003 Query 68354 AATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 376004 GATGCCTTCCTTGTCT 376019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921577574590520