Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3328 95.1 1e-14 >seq3328 Length=87304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || ||||| ||||| |||||||| ||| Sbjct 25591 ATACCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 25532 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || || || ||| |||| | |||||| || || ||| Sbjct 25531 GAGAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGA 25472 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| |||||||| ||||| || | | || | ||| || | ||||| Sbjct 25471 GGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCC 25412 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 || |||| ||| | || || || || || || || |||| Sbjct 25411 ACCTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGACAA 25372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||||||||| ||| | || | ||| || ||||| || || Sbjct 25786 GTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCT 25727 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||||||||||||||| || || ||||| || || ||||| || Sbjct 25726 GCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTG 25667 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | |||||||| || | || | || ||||| || || || Sbjct 25666 ACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTC 25607 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 25606 TTGACGAAGATTTGCAT 25590 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || ||||||||||||||||| |||| || || || || | || ||||| ||| || Sbjct 26008 TCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAG 25949 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| || || || || || ||||| ||||||| || | | Sbjct 25948 ATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTG 25889 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||||| | |||||||| |||| || | ||| || || || || || ||||| Sbjct 25888 TCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACG 25829 Query 114372 AAAATCTGCAT 114382 || || ||||| Sbjct 25828 AAGATTTGCAT 25818 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 ||||| || ||||||||||| || ||| || ||| || || || || ||||| || Sbjct 26236 TCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAG 26177 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| || ||||| || ||||| || |||||| || | | Sbjct 26176 ATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTGAATCTTGCTCTTGACGTTA 26117 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||||||| | || || |||| ||| | ||| || || || ||||| || ||| Sbjct 26116 TCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACA 26057 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 26056 AAGATCTGCAT 26046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420114476570292