Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 95.1 1e-14
>seq3328
Length=87304
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||||||||| || | | || | || | || ||||| ||||| |||||||| |||
Sbjct 25591 ATACCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 25532
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| ||||| || || || ||| |||| | |||||| || || |||
Sbjct 25531 GAGAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGA 25472
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| |||||||| ||||| || | | || | ||| || | |||||
Sbjct 25471 GGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCC 25412
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372
|| |||| ||| | || || || || || || || ||||
Sbjct 25411 ACCTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGACAA 25372
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| ||||| ||||||||||| ||| | || | ||| || ||||| || ||
Sbjct 25786 GTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCT 25727
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||||||||||||||||||||| || || ||||| || || ||||| ||
Sbjct 25726 GCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTG 25667
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||| | |||||||| || | || | || ||||| || || ||
Sbjct 25666 ACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTC 25607
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || || |||||
Sbjct 25606 TTGACGAAGATTTGCAT 25590
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|| ||||||||||||||||| |||| || || || || | || ||||| ||| ||
Sbjct 26008 TCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAG 25949
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | ||||| ||||| || || || || || ||||| ||||||| || | |
Sbjct 25948 ATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTG 25889
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| ||||| | |||||||| |||| || | ||| || || || || || |||||
Sbjct 25888 TCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACG 25829
Query 114372 AAAATCTGCAT 114382
|| || |||||
Sbjct 25828 AAGATTTGCAT 25818
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
||||| || ||||||||||| || ||| || ||| || || || || ||||| ||
Sbjct 26236 TCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAG 26177
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | ||||| ||||| || ||||| || ||||| || |||||| || | |
Sbjct 26176 ATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTGAATCTTGCTCTTGACGTTA 26117
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| ||||||| | || || |||| ||| | ||| || || || ||||| || |||
Sbjct 26116 TCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACA 26057
Query 114372 AAAATCTGCAT 114382
|| ||||||||
Sbjct 26056 AAGATCTGCAT 26046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420114476570292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |