Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq256 129 1e-24 seq3328 123 6e-23 seq1271 104 6e-17 >seq256 Length=121632 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || || || || |||||||||||| Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | || || || |||||| ||||| || |||||||| || | || || || || Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||||||||||| || ||||| ||||| ||||| || ||||||||||||||||| Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589 >seq3328 Length=87304 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||||| || || | || || || | ||| || ||||||||| Sbjct 25780 TCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAG 25721 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| |||||| ||||| |||||||| || |||| || || || Sbjct 25720 ATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTG 25661 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||||| || ||||| ||||| ||||| || || || ||||||||| Sbjct 25660 TCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACG 25601 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 25600 AAGATTTGCAT 25590 Score = 109 bits (120), Expect = 1e-18 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| ||||| || || || | ||||| ||||| ||||| || || || Sbjct 26275 TGACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCC 26216 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || || || || | || ||||| || ||||||| ||||| || | Sbjct 26215 GACAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGT 26156 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCG---CTCGA 288419 || || || ||||||||||| || || ||| || ||||| || || | ||| ||| Sbjct 26155 GGAATACCCTCTTTATCCTGAATCTT-GCTCTTGACGTTATCAATTGTGTCGGAGCTC-- 26099 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||||||||| || || ||||||||||| || |||||||| Sbjct 26098 -TCAACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 >seq1271 Length=109735 Score = 104 bits (114), Expect = 6e-17 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || || || | ||| ||||||| | || ||| | || || || || | ||| Sbjct 95457 GAGGCTGTCACTATCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGT 95516 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| |||| | | ||||| |||||||||||||| ||||| |||||| | || || Sbjct 95517 ATGAACGCCGCTTTGATGAAGCAATATATCGAATTTGTGGCCGATCGTCTTCTCCTAGCT 95576 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 || || | |||| ||||| ||| ||| || |||| ||| ||||| || || Sbjct 95577 CTAGGCAACCAGAAGTACTACAACTCGTCGAACCCGTTCGACTTCATGGAGTCGATATCA 95636 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGT 269336 | | || ||||| ||||||||||| |||||||| | |||||||| | | || ||||| Sbjct 95637 TTGGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAGAAGGCC-GGTGT 95695 Query 269337 AATG 269340 ||| Sbjct 95696 TATG 95699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179595590173098