Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq256 129 1e-24
seq3328 123 6e-23
seq1271 104 6e-17
>seq256
Length=121632
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || ||||| || || || || || || ||||||||||||
Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| || || || |||||| ||||| || |||||||| || | || || || ||
Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||||||||||| || ||||| ||||| ||||| || |||||||||||||||||
Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589
>seq3328
Length=87304
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| || || || ||||||| || || | || || || | ||| || |||||||||
Sbjct 25780 TCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAG 25721
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||||||||| |||||| ||||| |||||||| || |||| || || ||
Sbjct 25720 ATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTG 25661
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || |||||| || ||||| ||||| ||||| || || || |||||||||
Sbjct 25660 TCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACG 25601
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 25600 AAGATTTGCAT 25590
Score = 109 bits (120), Expect = 1e-18
Identities = 167/234 (71%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || ||||| ||||| || || || | ||||| ||||| ||||| || || ||
Sbjct 26275 TGACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCC 26216
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| | || || || || || | || ||||| || ||||||| ||||| || |
Sbjct 26215 GACAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGT 26156
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCG---CTCGA 288419
|| || || ||||||||||| || || ||| || ||||| || || | ||| |||
Sbjct 26155 GGAATACCCTCTTTATCCTGAATCTT-GCTCTTGACGTTATCAATTGTGTCGGAGCTC-- 26099
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| | ||||||||||| || || ||||||||||| || ||||||||
Sbjct 26098 -TCAACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
>seq1271
Length=109735
Score = 104 bits (114), Expect = 6e-17
Identities = 171/244 (70%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
|| || || || | ||| ||||||| | || ||| | || || || || | |||
Sbjct 95457 GAGGCTGTCACTATCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGT 95516
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| |||| | | ||||| |||||||||||||| ||||| |||||| | || ||
Sbjct 95517 ATGAACGCCGCTTTGATGAAGCAATATATCGAATTTGTGGCCGATCGTCTTCTCCTAGCT 95576
Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277
|| || | |||| ||||| ||| ||| || |||| ||| ||||| || ||
Sbjct 95577 CTAGGCAACCAGAAGTACTACAACTCGTCGAACCCGTTCGACTTCATGGAGTCGATATCA 95636
Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGT 269336
| | || ||||| ||||||||||| |||||||| | |||||||| | | || |||||
Sbjct 95637 TTGGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAGAAGGCC-GGTGT 95695
Query 269337 AATG 269340
|||
Sbjct 95696 TATG 95699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179595590173098
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |