Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1271 125 7e-24 seq1350 95.1 1e-14 seq3328 91.5 1e-13 seq256 87.8 2e-12 >seq1271 Length=109735 Score = 125 bits (138), Expect = 7e-24 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||||||||| || || | || ||||| | ||||||||| ||| ||||| Sbjct 95069 TAAGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAA 95010 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| | ||| ||||| | ||| ||||| || || || Sbjct 95009 CCGTAGAAGCATCGTGCCTCAGGTATCTGAACTTCGCCACTGAAGCGCTCAACGAGGTTC 94950 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||| || || || || || ||||| || || || |||||||| ||| Sbjct 94949 TCGTTGACGATACCATCTGATGCAGCAAAGAAGGCAAGGACATGGGAGATGAAATAGCGT 94890 Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || | ||||| | || | ||| ||| || || || || ||||| | ||| || Sbjct 94889 TCATCATCGTTGAGTCGGTTGTTCCAATCGTGCCAATCTTTCGAGAGGTCAATCTCTTCC 94830 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || ||||| ||||| || |||||||| Sbjct 94829 GCGGTCCAGAATGACGCTTCGGCCTTCTTGTACAT 94795 >seq1350 Length=581194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || || || | ||||||||||| ||||| | ||| ||||| || || || Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| ||||||||| ||||| ||||| | || || || |||||||| Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899 Query 38457 CG 38458 || Sbjct 375898 CG 375897 >seq3328 Length=87304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAA 38315 || || || ||||| || || ||||||||| | || || || | | || | | | | Sbjct 25374 GTCAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCGAC 25433 Query 38316 ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATT 38375 | | || | || |||| ||||||||||| ||||| | || || ||||| | || Sbjct 25434 AATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATC 25493 Query 38376 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAA 38435 | ||| || || ||||| || || | ||| || ||| |||||||||||||||||||||| Sbjct 25494 TTCGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAA 25553 Query 38436 GCGACGCTGCATTTGGTGCTGCG 38458 | || || || | ||||| || Sbjct 25554 TCCACTCTCCACCTCGTGCTCCG 25576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| ||||| || ||||| |||| ||||| | | Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || || || | || || || || || || | ||||| Sbjct 25650 GACACGATTGACAATG-TCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCA 25708 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| || ||||| || | | | || || ||||||||| Sbjct 25709 ACAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAA 25768 Query 38423 CATCCAAAAGGA 38434 ||| || || || Sbjct 25769 CATTCAGAAAGA 25780 >seq256 Length=121632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||||||| |||| ||||| | | ||||| | | Sbjct 86589 TTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACCATC 86648 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| || || || || | ||||| || ||| | Sbjct 86649 GACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAACGGTTG 86708 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||| |||| || | ||||| || ||||||||||||||| ||| Sbjct 86709 ATCTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAACATCCAGAAG 86768 Query 38433 G 38433 | Sbjct 86769 G 86769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500148472845440