Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1271 125 7e-24
seq1350 95.1 1e-14
seq3328 91.5 1e-13
seq256 87.8 2e-12
>seq1271
Length=109735
Score = 125 bits (138), Expect = 7e-24
Identities = 193/275 (70%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
|| ||||||||||| || || | || ||||| | ||||||||| ||| |||||
Sbjct 95069 TAAGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAA 95010
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
||||| ||||| || ||||| | ||| ||||| | ||| ||||| || || ||
Sbjct 95009 CCGTAGAAGCATCGTGCCTCAGGTATCTGAACTTCGCCACTGAAGCGCTCAACGAGGTTC 94950
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
||||||||||| || || || || || ||||| || || || |||||||| |||
Sbjct 94949 TCGTTGACGATACCATCTGATGCAGCAAAGAAGGCAAGGACATGGGAGATGAAATAGCGT 94890
Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|| | ||||| | || | ||| ||| || || || || ||||| | ||| ||
Sbjct 94889 TCATCATCGTTGAGTCGGTTGTTCCAATCGTGCCAATCTTTCGAGAGGTCAATCTCTTCC 94830
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || ||||| ||||| || ||||||||
Sbjct 94829 GCGGTCCAGAATGACGCTTCGGCCTTCTTGTACAT 94795
>seq1350
Length=581194
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| || || || || | ||||||||||| ||||| | ||| ||||| || || ||
Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||||||| ||||||||| ||||| ||||| | || || || ||||||||
Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899
Query 38457 CG 38458
||
Sbjct 375898 CG 375897
>seq3328
Length=87304
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAA 38315
|| || || ||||| || || ||||||||| | || || || | | || | | | |
Sbjct 25374 GTCAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCGAC 25433
Query 38316 ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATT 38375
| | || | || |||| ||||||||||| ||||| | || || ||||| | ||
Sbjct 25434 AATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATC 25493
Query 38376 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAA 38435
| ||| || || ||||| || || | ||| || ||| ||||||||||||||||||||||
Sbjct 25494 TTCGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAA 25553
Query 38436 GCGACGCTGCATTTGGTGCTGCG 38458
| || || || | ||||| ||
Sbjct 25554 TCCACTCTCCACCTCGTGCTCCG 25576
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || |||||||| ||||| || ||||| |||| ||||| | |
Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | | || || || | || || || || || || | |||||
Sbjct 25650 GACACGATTGACAATG-TCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCA 25708
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| ||||| || ||||| || | | | || || |||||||||
Sbjct 25709 ACAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAA 25768
Query 38423 CATCCAAAAGGA 38434
||| || || ||
Sbjct 25769 CATTCAGAAAGA 25780
>seq256
Length=121632
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||||||| |||| ||||| | | ||||| | |
Sbjct 86589 TTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACCATC 86648
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| || || || || | ||||| || ||| |
Sbjct 86649 GACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAACGGTTG 86708
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||| |||| || | ||||| || ||||||||||||||| |||
Sbjct 86709 ATCTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAACATCCAGAAG 86768
Query 38433 G 38433
|
Sbjct 86769 G 86769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500148472845440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |