Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq3773 486 2e-132
seq3616 161 1e-34
>seq3773
Length=51578
Score = 486 bits (538), Expect = 2e-132
Identities = 790/1129 (70%), Gaps = 10/1129 (1%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|| ||||| || || | || ||||||||||| ||||| |||||||| |||| || ||
Sbjct 18461 ATAGCGGCCTGAACTGCAGCACCGTATGCGACAGCCTCGTCGGGGTTGATCGACTTGTTT 18520
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || |||||||| || | ||||| | | | || || || ||||| || || ||
Sbjct 18521 GGCTCCTTACCGTTGAAGAAGTCCGAAACAAGCTTCTGGATCTTGGGGATACGAGTGGAA 18580
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
||||||||||| ||||| |||| || || || |||||||| | ||| || ||
Sbjct 18581 CCACCGACCAAGACGATCTCATGAACGGAAGACTTGTCGATCTTGGCGTCACGGAGAACA 18640
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
|| || || |||||| ||||| | |||| || || ||||| ||||| |||
Sbjct 18641 CGCTCAACTGGCTCCATAGTAGAGCGGAAGAGGTCCTGGCAAAGCTCCTCGAAACGAGCA 18700
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| || | ||| ||||| | || |||||||| || | |||
Sbjct 18701 CGGGTGATGGAGGTGTAGAAGTCGATGCCTTCGTAGAGGGAGTCAATTTCGATTGAGGTT 18760
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381
||||| | || || | || ||||| || ||||| || || ||||| | |||||| ||
Sbjct 18761 TGTGCGGATGATGAAAGGGTACGCTTGGCCCGCTCGCAAGCTGTTCGGAGACGACGGAGA 18820
Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT-TCAGAGAAGTG 7440
||||| | ||| ||||| |||||||| || || || || ||||| ||| ||||||
Sbjct 18821 GCACGAGCGTTGGTGGAAAGGTCTTTCTTGTGCTTCCGCTTGAACTCGGTCAC-GAAGTG 18879
Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500
| || | ||||| || ||||| |||||||| || || || || |||| ||
Sbjct 18880 GTTGACCAGACGGTTGTCGAAGTCCTCACCGCCCAAGTGAGTGTCACCGGCAGTCGACTT 18939
Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560
||| || |||||||| | || ||| | |||| ||| ||||| || || ||||| ||||
Sbjct 18940 GACCTCGAAGATACCCTCCTCGATGGTCAACAGCGAGACATCGAAAGTTCCACCGCCCAA 18999
Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620
||| || ||||| || || ||| | || | ||||| ||||||||||| ||||| ||
Sbjct 19000 GTCGAAGATGAGAACATTGCGCTCGCCCTCGGTCTTCTTGTCGAGACCGTAGGCGATGGC 19059
Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680
|| || || ||||| || || ||||| ||| ||| || ||||| || | |||||
Sbjct 19060 AGCGGCAGTGGGTTCGTTGATGATACGTAGAACGTTGAGACCAGCGATGAGACCGGCATC 19119
Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740
||| || ||||| ||||| || ||||| || ||||| ||||| || || || || | |
Sbjct 19120 TTTTGTTGCTTGACGTTGAGAGTCGTTGAAATAGGCGGGGACTGTCACCACGGCATTGTT 19179
Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATG 7799
|||| || || || |||||||| || | || |||| |||| |||| ||||| || |
Sbjct 19180 GACTGTCCCTCCCAGGTACGATTCGGCAGTCTCCCTCATCTTTGTTAAG-ACCATTGAGG 19238
Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859
| |||||||| | | || || || || || || || || || | | | || |
Sbjct 19239 AGATCTCTTCTGGTGTGAATGACTTGGTCTCGCCCTTGAACTCGACCTGGACGACTGGCT 19298
Query 7860 TATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919
| |||| || || |||||| ||| | | ||||| ||| | || ||||
Sbjct 19299 T-TCCG--GCCTTTTCGACAACCTTGAACGGGAAGTGCTTCATGTCGGCCTGAACCTCAG 19355
Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979
|| | || || | ||||| |||||||| ||||| || || |||||| | |||||||
Sbjct 19356 CATCAGCGAATTTGCGACCGATGAGACGCTTGGCATCGAAGACGGTGTTTGTCGGGTTCA 19415
Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGA 8039
|||| ||| ||||| || | ||| ||||| ||||| || | | || || || || |
Sbjct 19416 TGGCGACTTGATTCTTGGCTGAGTCACCGATGAGACGCTC---AGTGTCGGTGAAAGCAA 19472
Query 8040 CGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099
|| |||| || || ||||| || || |||||||| ||||| ||||| | ||||| |
Sbjct 19473 CGAACGACGGAGTGGTTCGGTTTCCCTGGTCGTTGGCAATGATTTCAATCCGGTCATCGC 19532
Query 8100 GCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148
| ||| || ||||| |||||||| || || |||||||| || |||||
Sbjct 19533 GGAAGATACCAACGCAAGAATACGTCGTCCCCAAATCAATGCCAATTGC 19581
>seq3616
Length=361826
Score = 161 bits (178), Expect = 1e-34
Identities = 363/541 (67%), Gaps = 7/541 (1%)
Strand=Plus/Plus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| |||||||| || ||||||||||| | | ||| || |||| || | | ||
Sbjct 327399 AGGTCCTCAAATCGAGCACGGGTAATTTGAGCGTTGAAGTCTTCGCCATCAAAGAGGGAG 327458
Query 7304 TCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| ||||| | || ||||| | || | | |||| ||| ||||| || |||||||| |
Sbjct 327459 TCGATTTCGACAGTAGTTTGAGTACCATTG--GATAGCGTGCGCTTAGCACGCTCACAAG 327516
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
|||| || | ||| || || ||||| |||| || || || |||||||| || || |
Sbjct 327517 CCGTCCGAAGACGCCGCAGAGCACGTGGGTCGCCCGACATGTCTTTCTTGGTCTTGCGCT 327576
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | |||||| ||| || | | ||||| || | ||||||||| || |
Sbjct 327577 GGAATTCCTTCTTGAAGTGCTCAAGCAGGTTTGTGTCGAAGTCCTGACCACCCAAATGAG 327636
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
|||| || || ||||| ||||| ||| | ||| || | |||| | | || ||||
Sbjct 327637 TATCGCCAGCAGTCGCCTTGACGGTAAAAACACCACCCTGGATGTGGAGAAGAGACACAT 327696
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTT 7599
|||| || || ||||| || || | || || || || || | ||| || |
Sbjct 327697 CAAAAGTCCCTCCACCAAGATCGTAGATTAGAACATTTCGCTCCTTCTCTGACTTGCCGG 327756
Query 7600 ATCG-AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
||| ||||||||||| || || || || || |||||||| || || || || | ||
Sbjct 327757 ATCCCAGACCGTACGCAATCGCGGCAGCGGTGGGTTCATTGATGATCCGGAGGACTTGCA 327816
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
| ||||||| | | || ||||| || || || ||||| ||||| ||||| || |
Sbjct 327817 GATCAGCAATGGCGCCAGCGTCTTTTGTTGCCTGACGTTGGTTGTCGTTGAAGTAAGCAG 327876
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778
| || || | ||| || | |||||||||| || || | | || || | |||||||
Sbjct 327877 GTACAGTAATGACGGCCTTTTTGACTTTCTTTCCAAGTTTTGTCTCGGCAACCTCTTTCA 327936
Query 7779 T 7779
|
Sbjct 327937 T 327937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635101908728440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |