Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3773 486 2e-132 seq3616 161 1e-34 >seq3773 Length=51578 Score = 486 bits (538), Expect = 2e-132 Identities = 790/1129 (70%), Gaps = 10/1129 (1%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 || ||||| || || | || ||||||||||| ||||| |||||||| |||| || || Sbjct 18461 ATAGCGGCCTGAACTGCAGCACCGTATGCGACAGCCTCGTCGGGGTTGATCGACTTGTTT 18520 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || |||||||| || | ||||| | | | || || || ||||| || || || Sbjct 18521 GGCTCCTTACCGTTGAAGAAGTCCGAAACAAGCTTCTGGATCTTGGGGATACGAGTGGAA 18580 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 ||||||||||| ||||| |||| || || || |||||||| | ||| || || Sbjct 18581 CCACCGACCAAGACGATCTCATGAACGGAAGACTTGTCGATCTTGGCGTCACGGAGAACA 18640 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || || || |||||| ||||| | |||| || || ||||| ||||| ||| Sbjct 18641 CGCTCAACTGGCTCCATAGTAGAGCGGAAGAGGTCCTGGCAAAGCTCCTCGAAACGAGCA 18700 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| || | ||| ||||| | || |||||||| || | ||| Sbjct 18701 CGGGTGATGGAGGTGTAGAAGTCGATGCCTTCGTAGAGGGAGTCAATTTCGATTGAGGTT 18760 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 ||||| | || || | || ||||| || ||||| || || ||||| | |||||| || Sbjct 18761 TGTGCGGATGATGAAAGGGTACGCTTGGCCCGCTCGCAAGCTGTTCGGAGACGACGGAGA 18820 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT-TCAGAGAAGTG 7440 ||||| | ||| ||||| |||||||| || || || || ||||| ||| |||||| Sbjct 18821 GCACGAGCGTTGGTGGAAAGGTCTTTCTTGTGCTTCCGCTTGAACTCGGTCAC-GAAGTG 18879 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | || | ||||| || ||||| |||||||| || || || || |||| || Sbjct 18880 GTTGACCAGACGGTTGTCGAAGTCCTCACCGCCCAAGTGAGTGTCACCGGCAGTCGACTT 18939 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| || |||||||| | || ||| | |||| ||| ||||| || || ||||| |||| Sbjct 18940 GACCTCGAAGATACCCTCCTCGATGGTCAACAGCGAGACATCGAAAGTTCCACCGCCCAA 18999 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 ||| || ||||| || || ||| | || | ||||| ||||||||||| ||||| || Sbjct 19000 GTCGAAGATGAGAACATTGCGCTCGCCCTCGGTCTTCTTGTCGAGACCGTAGGCGATGGC 19059 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || ||||| || || ||||| ||| ||| || ||||| || | ||||| Sbjct 19060 AGCGGCAGTGGGTTCGTTGATGATACGTAGAACGTTGAGACCAGCGATGAGACCGGCATC 19119 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 ||| || ||||| ||||| || ||||| || ||||| ||||| || || || || | | Sbjct 19120 TTTTGTTGCTTGACGTTGAGAGTCGTTGAAATAGGCGGGGACTGTCACCACGGCATTGTT 19179 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATG 7799 |||| || || || |||||||| || | || |||| |||| |||| ||||| || | Sbjct 19180 GACTGTCCCTCCCAGGTACGATTCGGCAGTCTCCCTCATCTTTGTTAAG-ACCATTGAGG 19238 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 | |||||||| | | || || || || || || || || || | | | || | Sbjct 19239 AGATCTCTTCTGGTGTGAATGACTTGGTCTCGCCCTTGAACTCGACCTGGACGACTGGCT 19298 Query 7860 TATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919 | |||| || || |||||| ||| | | ||||| ||| | || |||| Sbjct 19299 T-TCCG--GCCTTTTCGACAACCTTGAACGGGAAGTGCTTCATGTCGGCCTGAACCTCAG 19355 Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979 || | || || | ||||| |||||||| ||||| || || |||||| | ||||||| Sbjct 19356 CATCAGCGAATTTGCGACCGATGAGACGCTTGGCATCGAAGACGGTGTTTGTCGGGTTCA 19415 Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGA 8039 |||| ||| ||||| || | ||| ||||| ||||| || | | || || || || | Sbjct 19416 TGGCGACTTGATTCTTGGCTGAGTCACCGATGAGACGCTC---AGTGTCGGTGAAAGCAA 19472 Query 8040 CGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099 || |||| || || ||||| || || |||||||| ||||| ||||| | ||||| | Sbjct 19473 CGAACGACGGAGTGGTTCGGTTTCCCTGGTCGTTGGCAATGATTTCAATCCGGTCATCGC 19532 Query 8100 GCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | ||| || ||||| |||||||| || || |||||||| || ||||| Sbjct 19533 GGAAGATACCAACGCAAGAATACGTCGTCCCCAAATCAATGCCAATTGC 19581 >seq3616 Length=361826 Score = 161 bits (178), Expect = 1e-34 Identities = 363/541 (67%), Gaps = 7/541 (1%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||| || ||||||||||| | | ||| || |||| || | | || Sbjct 327399 AGGTCCTCAAATCGAGCACGGGTAATTTGAGCGTTGAAGTCTTCGCCATCAAAGAGGGAG 327458 Query 7304 TCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || ||||| | || ||||| | || | | |||| ||| ||||| || |||||||| | Sbjct 327459 TCGATTTCGACAGTAGTTTGAGTACCATTG--GATAGCGTGCGCTTAGCACGCTCACAAG 327516 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 |||| || | ||| || || ||||| |||| || || || |||||||| || || | Sbjct 327517 CCGTCCGAAGACGCCGCAGAGCACGTGGGTCGCCCGACATGTCTTTCTTGGTCTTGCGCT 327576 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | |||||| ||| || | | ||||| || | ||||||||| || | Sbjct 327577 GGAATTCCTTCTTGAAGTGCTCAAGCAGGTTTGTGTCGAAGTCCTGACCACCCAAATGAG 327636 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 |||| || || ||||| ||||| ||| | ||| || | |||| | | || |||| Sbjct 327637 TATCGCCAGCAGTCGCCTTGACGGTAAAAACACCACCCTGGATGTGGAGAAGAGACACAT 327696 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTT 7599 |||| || || ||||| || || | || || || || || | ||| || | Sbjct 327697 CAAAAGTCCCTCCACCAAGATCGTAGATTAGAACATTTCGCTCCTTCTCTGACTTGCCGG 327756 Query 7600 ATCG-AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 ||| ||||||||||| || || || || || |||||||| || || || || | || Sbjct 327757 ATCCCAGACCGTACGCAATCGCGGCAGCGGTGGGTTCATTGATGATCCGGAGGACTTGCA 327816 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 | ||||||| | | || ||||| || || || ||||| ||||| ||||| || | Sbjct 327817 GATCAGCAATGGCGCCAGCGTCTTTTGTTGCCTGACGTTGGTTGTCGTTGAAGTAAGCAG 327876 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | |||||||||| || || | | || || | ||||||| Sbjct 327877 GTACAGTAATGACGGCCTTTTTGACTTTCTTTCCAAGTTTTGTCTCGGCAACCTCTTTCA 327936 Query 7779 T 7779 | Sbjct 327937 T 327937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635101908728440