Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1271 120 4e-22 >seq1271 Length=109735 Score = 120 bits (132), Expect = 4e-22 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| || || | |||||||| || |||||||| || ||| | | |||| | | Sbjct 95171 AGTTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTC 95230 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | |||| ||| | || ||| | || || || ||| |||||||| |||||| |||| Sbjct 95231 -TACCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTT 95289 Query 102229 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||| ||| | |||| ||||| |||||||| ||||| ||||| || || |||||| Sbjct 95290 CCTT-TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCG 95348 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||||||||| || ||||| || ||| || ||||| Sbjct 95349 AACGAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGC 95392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620712208641520