Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1271 113 5e-20 seq3688 102 1e-16 >seq1271 Length=109735 Score = 113 bits (124), Expect = 5e-20 Identities = 154/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || |||||||| || || |||||||| || |||||| ||||| Sbjct 95393 GGCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCC 95334 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 ||||| |||||||||||||| | ||| |||| | ||| || || ||| |||||| | Sbjct 95333 CGGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCA-AAGGAACCGCTGAAGAAAA 95275 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC-- 117449 ||||||||||| || || |||| ||||| | ||||||| ||| || |||| Sbjct 95274 TACCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGG---TAGAGTTCTTGTCTT 95218 Query 117450 -AAACCATTTCATTGCCCATTTCGCCTTCTT 117479 | |||||| || ||||| | || ||||| Sbjct 95217 GGATCCATTTGATAGCCCAGTCTGCTTTCTT 95187 >seq3688 Length=146739 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 ||| || |||| || || | || ||||||||||| || || |||||| | || Sbjct 22811 GACGTAAGTTGGTAGTGCAAGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGT 22870 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 ||||| | |||||| || ||||| || || || ||| ||||| | |||||| ||||| Sbjct 22871 ATACTCGATAATTTCGGTGCACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTT 22930 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||||| |||||| || |||||||| | ||| | || | || ||||||||||| | Sbjct 22931 GCTCTTGCGGTTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTGGGC 22990 Query 106627 CTTGAGAATTG 106637 || ||| |||| Sbjct 22991 CTCGAGGATTG 23001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589952104808840