Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1271 113 5e-20
seq3688 102 1e-16
>seq1271
Length=109735
Score = 113 bits (124), Expect = 5e-20
Identities = 154/211 (73%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| || |||||||| || || |||||||| || |||||| |||||
Sbjct 95393 GGCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCC 95334
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391
||||| |||||||||||||| | ||| |||| | ||| || || ||| |||||| |
Sbjct 95333 CGGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCA-AAGGAACCGCTGAAGAAAA 95275
Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC-- 117449
||||||||||| || || |||| ||||| | ||||||| ||| || ||||
Sbjct 95274 TACCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGG---TAGAGTTCTTGTCTT 95218
Query 117450 -AAACCATTTCATTGCCCATTTCGCCTTCTT 117479
| |||||| || ||||| | || |||||
Sbjct 95217 GGATCCATTTGATAGCCCAGTCTGCTTTCTT 95187
>seq3688
Length=146739
Score = 102 bits (112), Expect = 1e-16
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506
||| || |||| || || | || ||||||||||| || || |||||| | ||
Sbjct 22811 GACGTAAGTTGGTAGTGCAAGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGT 22870
Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566
||||| | |||||| || ||||| || || || ||| ||||| | |||||| |||||
Sbjct 22871 ATACTCGATAATTTCGGTGCACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTT 22930
Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626
||||| |||||| || |||||||| | ||| | || | || ||||||||||| |
Sbjct 22931 GCTCTTGCGGTTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTGGGC 22990
Query 106627 CTTGAGAATTG 106637
|| ||| ||||
Sbjct 22991 CTCGAGGATTG 23001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589952104808840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |