Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 147 5e-30
seq256 113 1e-19
>seq3328
Length=87304
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || |||||||| ||||| ||||| |||| ||| || |||||||| ||
Sbjct 25798 ACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCC 25739
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| ||||||||||| || || |||||||| || || || ||||| || || ||
Sbjct 25738 AGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGT 25679
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || ||||| ||||| || ||| || || || || | |||||
Sbjct 25678 ATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTG 25619
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | ||||||
Sbjct 25618 CCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 136 bits (150), Expect = 9e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| |||||||| || ||||| || ||||| |||| ||||| | |||||| ||
Sbjct 25570 ACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCA 25511
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || || |||||||||||||| |||||||| ||
Sbjct 25510 AGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGG 25451
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || ||||| ||||| |||||| || | ||| | |||||
Sbjct 25450 ATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTC 25391
Query 195112 CCTGT 195116
|| ||
Sbjct 25390 CCAGT 25386
Score = 136 bits (150), Expect = 9e-27
Identities = 146/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008
||| |||||||| |||||||| || || | || || || | ||||||||| |||||
Sbjct 26009 CTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAA 25950
Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068
||| | || || |||||||| || || || || ||||||||||| ||| ||| |||||
Sbjct 25949 GATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTAACGTT 25890
Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128
||||| ||||| || ||| ||||| || || | ||||||||| || | || |||||
Sbjct 25889 GTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTAC 25830
Query 195129 GAACACTTGCATT 195141
||| | |||||||
Sbjct 25829 GAAGATTTGCATT 25817
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||||||||| || || || || || || | || || | || |||||||||||
Sbjct 25283 GTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCGAGCTG 25224
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || || ||||| | || || || || |||||||||||||| ||||| ||||| ||
Sbjct 25223 TTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTT 25164
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||| ||| ||||| |||||||| | ||||| || ||
Sbjct 25163 GGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 25104
>seq256
Length=121632
Score = 113 bits (124), Expect = 1e-19
Identities = 135/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||| || | ||||| || | |||||| |||||||||||
Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||| ||||| || || |||||||| ||||| || || || |||||| || ||
Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648
Query 195073 ATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129
|||||||| ||| ||| || || ||||| | ||||| || |||| ||| || |||
Sbjct 86647 ATGGTGTCGCTCGA---TTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACG 86591
Query 195130 AA 195131
||
Sbjct 86590 AA 86589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109426288528397
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |