Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3328 147 5e-30 seq256 113 1e-19 >seq3328 Length=87304 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| ||||| ||||| |||| ||| || |||||||| || Sbjct 25798 ACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCC 25739 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| ||||||||||| || || |||||||| || || || ||||| || || || Sbjct 25738 AGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGT 25679 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||| ||||| || ||| || || || || | ||||| Sbjct 25678 ATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTG 25619 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 25618 CCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| || ||||| || ||||| |||| ||||| | |||||| || Sbjct 25570 ACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCA 25511 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || || |||||||||||||| |||||||| || Sbjct 25510 AGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGG 25451 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| ||||| |||||| || | ||| | ||||| Sbjct 25450 ATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTC 25391 Query 195112 CCTGT 195116 || || Sbjct 25390 CCAGT 25386 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| |||||||| |||||||| || || | || || || | ||||||||| ||||| Sbjct 26009 CTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAA 25950 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 ||| | || || |||||||| || || || || ||||||||||| ||| ||| ||||| Sbjct 25949 GATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTAACGTT 25890 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 ||||| ||||| || ||| ||||| || || | ||||||||| || | || ||||| Sbjct 25889 GTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTAC 25830 Query 195129 GAACACTTGCATT 195141 ||| | ||||||| Sbjct 25829 GAAGATTTGCATT 25817 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || || || || | || || | || ||||||||||| Sbjct 25283 GTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCGAGCTG 25224 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | || || || || |||||||||||||| ||||| ||||| || Sbjct 25223 TTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTT 25164 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| ||| ||||| |||||||| | ||||| || || Sbjct 25163 GGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 25104 >seq256 Length=121632 Score = 113 bits (124), Expect = 1e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||| || | ||||| || | |||||| ||||||||||| Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||| ||||| || || |||||||| ||||| || || || |||||| || || Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 195073 ATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||||||| ||| ||| || || ||||| | ||||| || |||| ||| || ||| Sbjct 86647 ATGGTGTCGCTCGA---TTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACG 86591 Query 195130 AA 195131 || Sbjct 86590 AA 86589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109426288528397