Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3773 114 1e-19 >seq3773 Length=51578 Score = 114 bits (126), Expect = 1e-19 Identities = 379/586 (65%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||||| || || || ||| ||| |||||| | | | ||| Sbjct 19581 GCAATTGGCATTGATTTGGGGACGACGTATTCTTGCGTTGGTATCTTCCGCGATGACCGG 19522 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||| |||||||| || || || ||| |||| ||||| || | ||| ||||||| Sbjct 19521 ATTGAAATCATTGCCAACGACCAGGGAAACCGAACCACTCCGTCGTTCGTTGCTTTCACC 19462 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | | | | ||||| |||| || |||||| | | || || || || Sbjct 19461 GACACTGAGCGTCTCATCGGTGACTCAGCCAAGAATCAAGTCGCCATGAACCCGACAAAC 19402 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || ||| | || || | | || |||| | |||||||| Sbjct 19401 ACCGTCTTCGATGCCAAGCGTCTCATCGGTCGCAAATTCGCTGATGCTGAGGTTCAGGCC 19342 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || |||||||| | || ||| | |||| | | ||||| || | | || | Sbjct 19341 GACATGAAGCACTTCCCGTTCAAGGTTGTCGAAAAGGCCGGAAAGCCAG-TCGTCCAGGT 19283 Query 550292 ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | || ||| |||||||| | || || || ||||| |||| Sbjct 19282 CGAGTTCAAGGGCGAGACCAAGTCATTCACACCAGAAGAGATCTCCTCAATGGTCTTAAC 19223 Query 550351 GAAAATGAAACAAACAGCCA----GTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 || |||| | || ||| || | | | || || || | |||| || Sbjct 19222 AAAGATGAGGGAGACTGCCGAATCGTACCTGGGAGGGACA----GTCAACAATGCCGTGG 19167 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || ||||| || ||||| ||||||||||| || |||||||| || | | Sbjct 19166 TGACAGTCCCCGCCTATTTCAACGACTCTCAACGTCAAGCAACAAAAGATGCCGGTCTCA 19107 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | ||||| || || ||||| ||||| ||||| ||||| ||||| ||||| | || || | Sbjct 19106 TCGCTGGTCTCAACGTTCTACGTATCATCAACGAACCCACTGCCGCTGCCATCGCCTACG 19047 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 | || || || | | || || | ||||| |||||||| || Sbjct 19046 GTCTCGACAAGAAGACCGAGGGCGAGCGCAATGTTCTCATCTTCGA 19001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029090226371590