Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3736 84.2 2e-11 seq199 84.2 2e-11 >seq3736 Length=790089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 |||||| || || || || || || || ||||||| |||| |||||||| || Sbjct 520346 GGAAAGTTCCTAGGTTCTCTTTCCAGTTGCACTTTCAGCGCATCCAGATGATCCAGATAC 520287 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 || ||||||||||||| || |||| || |||||| || | || ||||| Sbjct 520286 ACATGAGCGTCTCCCATCGTTTGGATGAAAGTTCCCGGCGTAAGATCACATACATGAGCG 520227 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | ||||| ||||||| || |||| ||| ||||| ||||| || ||||| ||||| || Sbjct 520226 AGCATGTGTGTGAGGATAGCGTAGGAGGCAATGTTGAAGGGCACGCCGAGGCCCATATC 520168 >seq199 Length=116049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074 ||||||| |||||| || | || ||| | || |||| |||||||| || |||||| Sbjct 9856 TCGTCAAAGTGAGGATGCGAACGACCAAGATTCCTCAGATCGGCGACAAATTCGCGTCGC 9915 Query 52075 T-CACGGCGCAAAAGGGGACG-TGCGGAGC-CGTCCTGACCCAGGAGGACATGCCCTTCG 52131 |||||| || || || || | ||| | | | | || || || |||||||||||| Sbjct 9916 GGCACGGC-CAGAAAGGTACTATTGGGATCACTTACCGATCC--GAAGACATGCCCTTCA 9972 Query 52132 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191 || || || |||||||| || ||||||||||| || |||||| |||| || | |||| Sbjct 9973 CCAGCGAAGGTGTGGTGCCAGATCTCATCATCAATCCGCACGCCATTCCGTCTCGCATGA 10032 Query 52192 C 52192 | Sbjct 10033 C 10033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408598222714943