Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3328 91.5 1e-13 >seq3328 Length=87304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| ||||| || ||||| |||| || ||| | |||| || | ||| Sbjct 25564 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCAAGCTGC 25505 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| ||||| || |||||||| ||||| || || || || Sbjct 25504 TTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTA 25445 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | |||||| || | |||| || || || || Sbjct 25444 GCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTCCCAGTG 25385 Query 101447 AAAGTTTTTACAA 101459 | || || |||| Sbjct 25384 AGGGTCTTGACAA 25372 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| || || || || || || || || || || || || || || Sbjct 25306 CCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTC--CG 25249 Query 101303 ATAGT-TCTGGCA-TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 |||| || ||| || || | || || || ||||| ||||| ||||| ||||| || | Sbjct 25248 ATAGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAG 25189 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || || ||||| || || ||| | || | ||||| || | |||| Sbjct 25188 GAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCA 25129 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||||| |||| || ||||| || Sbjct 25128 CCTCAAGGGTGATGGTCTTGCCAGT 25104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396259607859087