Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1271 111 3e-19 >seq1271 Length=109735 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | |||||||||||| |||| | || || || || ||| || |||| |||| Sbjct 95403 AGAGGAGGCAGGCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGA 95344 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || || || ||||| | |||| || || ||||||||||||| || || || || Sbjct 95343 AGGTCAGGCCCGGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGC 95284 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||| || |||||||| || ||||| || ||| | | |||| | || ||||| Sbjct 95283 TGAAGAAAATACCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGGTAGAGTTCT 95224 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| |||||| | ||||||||||| ||||| |||||| || Sbjct 95223 TGTCTTGGATCCATTTGATAGCCCAGTCTGCTTTCTTACGGATGCAAGG 95175 Score = 98.7 bits (108), Expect = 2e-15 Identities = 172/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || |||||| || ||||||||| | |||||| | Sbjct 95044 TCTCGGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAGAAGCATCGTGCCTCAGGTA 94985 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| ||||| ||| | ||| | || ||||| ||||| || |||||||| |||| Sbjct 94984 TCTGAACTTCGCCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATACCATCTGATGCAG 94925 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGCATTCC 48605 ||||||||||||||||||| | ||||| ||| || | | | ||| | |||| Sbjct 94924 CAAAGAAGGCAAGGACATGGGAGATGAAATAGCGTTCATCATCGTTGAGTCGGTTGTTCC 94865 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 | | || ||||| ||||| | |||||| | |||||||| ||||| || | Sbjct 94864 AATCGTGCCAATCTTTCGAGAGGTCAATCTCTTCCGCGGTCCAGAATGACGCTTCGGCCT 94805 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 94804 TCTTGTACAT 94795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931487492573440