Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1271 113 5e-20 seq3688 95.1 1e-14 >seq1271 Length=109735 Score = 113 bits (124), Expect = 5e-20 Identities = 154/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079 ||||| || | ||||| || |||||| | |||| || ||| ||||||| | Sbjct 95187 AAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTCTA---CCTTCGCTCAA 95243 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTAT 65138 ||||| |||| || || |||||||||||| |||||| ||| || || ||| | || Sbjct 95244 CGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTT-TGCATCAAT 95302 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 || ||| | |||||||||||||| ||||| ||||| |||||| || |||||||| || Sbjct 95303 TTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGAACTTATCTC 95362 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || |||||||| || ||| || |||||| Sbjct 95363 TCGCGATGAGGGGCTTCACACTGACTTTGCC 95393 >seq3688 Length=146739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 ||||||||||| || | || | |||| | |||||||| || || ||| ||||| ||| Sbjct 22987 CAGACGGAGACCGGCAACCCTTTTATGTTGTACAAGGACGCATGCAACCGCAAGAGCAAC 22928 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || |||||| | || ||||| ||||| ||| | ||||| |||||| | ||||| || Sbjct 22927 CAGAAGAATCTTGGGACAATTCGTAGCTCGAATTTGTGCACCGAAATTATCGAGTATACT 22868 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 | |||||| || || ||||||||||| || | || || |||| || ||| Sbjct 22867 GCACCAGATGAGGTAGCAGTATGCAATTTGGCTTCGCTTGCACTACCAACTTACGTC 22811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596540584346080