Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1271 141 3e-28
seq3688 118 3e-21
seq1891 105 2e-17
>seq1271
Length=109735
Score = 141 bits (156), Expect = 3e-28
Identities = 166/222 (75%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| || |||||| | ||||||||||| ||||||||||| |||||| | |
Sbjct 95173 TTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTCTA 95232
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|| ||| || |||||||| || |||| || ||||| ||||| ||||| ||| | |
Sbjct 95233 CCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCT 95292
Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615
| ||| || ||||| |||||||| ||||| ||| || | || || ||| || || |||
Sbjct 95293 T-TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAAC 95351
Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
|||||||| || | || |||| |||||||| || ||||||
Sbjct 95352 GAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGCC 95393
>seq3688
Length=146739
Score = 118 bits (130), Expect = 3e-21
Identities = 307/465 (66%), Gaps = 5/465 (1%)
Strand=Plus/Plus
Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969
||||||| |||||| | ||| | ||||| ||| |||| || || | || |||
Sbjct 23208 ACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAATAGATCGCGCGCGCG-GAC 23266
Query 155970 T-CCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028
| |||| | ||||||||||| || | || || || || | ||| | || ||
Sbjct 23267 TTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAAGACATCGGCGTGCCAAGG 23326
Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085
||| || || |||||||| ||| || |||| ||||| || || ||||| | ||
Sbjct 23327 CTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACCTTGGTCGACATATCTCGC 23386
Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145
|| || |||||||||| |||||||| | ||| || || || | || || || |||
Sbjct 23387 GGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAGGACCCGTTTGTGCCGGC 23446
Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205
||| | ||| || | | || | | |||||| | || ||||| || || | | ||
Sbjct 23447 AATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCCAATGCCTCCCGCCGTCTT 23506
Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
|| || ||||||| ||| | || | | | ||||||||||| || |||| |||
Sbjct 23507 CGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTCAATGCTGTCCTCTTTCAT 23566
Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325
| || ||||||| || || ||| |||| || ||||||||||| || || ||
Sbjct 23567 GTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACCAGCGTTGAAGAGAGTTGG 23626
Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370
| || || | ||||| || | ||||||| || || |||||
Sbjct 23627 GGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGTCTC 23671
>seq1891
Length=98495
Score = 105 bits (116), Expect = 2e-17
Identities = 110/141 (78%), Gaps = 5/141 (4%)
Strand=Plus/Minus
Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
||||| || ||||| ||||||||||| | || ||||| ||| || | ||||||||
Sbjct 23620 AGAATCTCCTTCAAG-CGGGGAACACCCAGTGTGACGTT---CTTCGAAGAGACACCAGC 23565
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||| ||||| || |||||||| | ||| |||| |||||||||||| |||||| || |
Sbjct 23564 AAAATGGAATGTGTTCAGAGTCATTTGTGTAGCTGGCTCACCAATCGATTGTGCGGCTAG 23505
Query 301932 CATACCAACCATTTCTCCTGG 301952
|| ||||||||| ||||| ||
Sbjct 23504 CACACCAACCATCTCTCCAGG 23484
Score = 98.7 bits (108), Expect = 3e-15
Identities = 173/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||| | ||| |||| ||||| ||||| || |||||||| |||||| | || ||
Sbjct 22853 CATGACGTCCTCCAACGCCTTGACCAAACGGCGTTGAATATAGCCAGTTTCGGCCGTCTT 22794
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
|| || || ||||| || || | |||||| |||| ||||||||||| | || ||
Sbjct 22793 CACCGCGGTGTCAATAAGGCCTTCTCGACCAGCCATGGCATGGAAGAAGAATTCCGTGGG 22734
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || |||| | ||||| |||| ||||| || | || ||| || |||| ||||
Sbjct 22733 TGTGAGGCCCCTTAGGTAGGAGTTCTCGACGAACCCTCTCGACTCCGGAGAATAGTCGTC 22674
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||| |||||||| ||||| || || | | | | || | || || || || || || ||
Sbjct 22673 CTTAGTAAAGTGAGGCAGCGTTCTATATTTAAATCCAAACGGAATGCGTTTACCCTCCAC 22614
Query 302805 GTTCTGCTGTCC 302816
|||||| ||
Sbjct 22613 CGACTGCTGCCC 22602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471744224833267
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |