Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1271 141 3e-28 seq3688 118 3e-21 seq1891 105 2e-17 >seq1271 Length=109735 Score = 141 bits (156), Expect = 3e-28 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || |||||| | ||||||||||| ||||||||||| |||||| | | Sbjct 95173 TTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTCTA 95232 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| || |||||||| || |||| || ||||| ||||| ||||| ||| | | Sbjct 95233 CCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCT 95292 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| || ||||| |||||||| ||||| ||| || | || || ||| || || ||| Sbjct 95293 T-TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAAC 95351 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||||||| || | || |||| |||||||| || |||||| Sbjct 95352 GAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGCC 95393 >seq3688 Length=146739 Score = 118 bits (130), Expect = 3e-21 Identities = 307/465 (66%), Gaps = 5/465 (1%) Strand=Plus/Plus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| |||||| | ||| | ||||| ||| |||| || || | || ||| Sbjct 23208 ACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAATAGATCGCGCGCGCG-GAC 23266 Query 155970 T-CCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 | |||| | ||||||||||| || | || || || || | ||| | || || Sbjct 23267 TTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAAGACATCGGCGTGCCAAGG 23326 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||| || || |||||||| ||| || |||| ||||| || || ||||| | || Sbjct 23327 CTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACCTTGGTCGACATATCTCGC 23386 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 || || |||||||||| |||||||| | ||| || || || | || || || ||| Sbjct 23387 GGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAGGACCCGTTTGTGCCGGC 23446 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | ||| || | | || | | |||||| | || ||||| || || | | || Sbjct 23447 AATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCCAATGCCTCCCGCCGTCTT 23506 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || ||||||| ||| | || | | | ||||||||||| || |||| ||| Sbjct 23507 CGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTCAATGCTGTCCTCTTTCAT 23566 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | || ||||||| || || ||| |||| || ||||||||||| || || || Sbjct 23567 GTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACCAGCGTTGAAGAGAGTTGG 23626 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | || || | ||||| || | ||||||| || || ||||| Sbjct 23627 GGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGTCTC 23671 >seq1891 Length=98495 Score = 105 bits (116), Expect = 2e-17 Identities = 110/141 (78%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 ||||| || ||||| ||||||||||| | || ||||| ||| || | |||||||| Sbjct 23620 AGAATCTCCTTCAAG-CGGGGAACACCCAGTGTGACGTT---CTTCGAAGAGACACCAGC 23565 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| || |||||||| | ||| |||| |||||||||||| |||||| || | Sbjct 23564 AAAATGGAATGTGTTCAGAGTCATTTGTGTAGCTGGCTCACCAATCGATTGTGCGGCTAG 23505 Query 301932 CATACCAACCATTTCTCCTGG 301952 || ||||||||| ||||| || Sbjct 23504 CACACCAACCATCTCTCCAGG 23484 Score = 98.7 bits (108), Expect = 3e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||| |||| ||||| ||||| || |||||||| |||||| | || || Sbjct 22853 CATGACGTCCTCCAACGCCTTGACCAAACGGCGTTGAATATAGCCAGTTTCGGCCGTCTT 22794 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || ||||| || || | |||||| |||| ||||||||||| | || || Sbjct 22793 CACCGCGGTGTCAATAAGGCCTTCTCGACCAGCCATGGCATGGAAGAAGAATTCCGTGGG 22734 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || |||| | ||||| |||| ||||| || | || ||| || |||| |||| Sbjct 22733 TGTGAGGCCCCTTAGGTAGGAGTTCTCGACGAACCCTCTCGACTCCGGAGAATAGTCGTC 22674 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| |||||||| ||||| || || | | | | || | || || || || || || || Sbjct 22673 CTTAGTAAAGTGAGGCAGCGTTCTATATTTAAATCCAAACGGAATGCGTTTACCCTCCAC 22614 Query 302805 GTTCTGCTGTCC 302816 |||||| || Sbjct 22613 CGACTGCTGCCC 22602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471744224833267