Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3119 131 3e-24 seq332 102 1e-15 seq3688 100 5e-15 seq1271 96.9 5e-14 >seq3119 Length=325962 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||| || || ||||||||||||||| | |||||||||||||| || ||| Sbjct 139281 GCCGCCAACTACCTTGATATTAAGCCCCTCCTCGATGTCGGGTGCAAGACCGTTGCGAAC 139222 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| || ||||| |||||||||||||| || || || ||| Sbjct 139221 ATGATCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACCTTCAATATTCAGAACG 139167 >seq332 Length=83982 Score = 102 bits (112), Expect = 1e-15 Identities = 85/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 ||||||| |||||||| || || || ||||| || | ||| | ||||||| |||||||| Sbjct 55888 TGCCGTCTGTGCCGTTCTTGAATCCAACCGGGAAGGAGAGCCCGGACGCCAATTCGCGGT 55947 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGC 2175178 ||| ||| ||||| || |||||||| ||||||||| ||||||| Sbjct 55948 GCAACTGACTCTCCGTAGTGCGCGCACCCACGGCG-CCCACGC 55989 >seq3688 Length=146739 Score = 100 bits (110), Expect = 5e-15 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| | ||| |||| ||| ||||| |||||||| ||||||| ||||| || Sbjct 23370 TGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAG 23429 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCG--CACCTTG--TGCGCGGCAAA 2073656 ||||| ||||| || | ||| | || | ||| || || || || | || Sbjct 23430 GACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGC--- 23486 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || ||||| || |||| ||| ||||| || ||||| | |||| || |||||||| || Sbjct 23487 -CCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACC 23545 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 || || ||| | |||||||| | || |||||||| Sbjct 23546 TTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGA 23584 >seq1271 Length=109735 Score = 96.9 bits (106), Expect = 5e-14 Identities = 173/249 (69%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||| ||| || || || ||| |||||| |||||||||||||| | | Sbjct 95695 ACACCGGCCTTCTGATAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAT 95636 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 || ||| ||||||| | ||||||||| | || ||||| ||||| | || || Sbjct 95635 GATATCGACTCCATGAAGTCGAACGGGTTCGACGAGTTGTAGTACTTCTGGTTGCCTAGA 95576 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 || | | || || || ||||| || ||||| || || || ||| | |||||||||| Sbjct 95575 GCTAGG--AGAAGACGATCGGCCACAAATTCGATATATTGCTTCATCAAAGCGGCGTTCA 95518 Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 | || | |||||| | ||||| | ||| | | |||||||| |||||| ||| || Sbjct 95517 TACCCAGCAGAGCGCAA--GGCAGAGCCTCCGTTAGAAACTCTTGCTCGATAGTGACAGC 95460 Query 794129 CTCGATGAT 794137 ||| |||| Sbjct 95459 CTCAGTGAT 95451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915832496583149