Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3328 118 8e-22 >seq3328 Length=87304 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||| | ||| || ||||| || || ||||| || || || |||||||| |||| Sbjct 25306 CCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAT 25247 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || ||||| |||||||| ||| | ||||| | ||||||||||| ||| Sbjct 25246 AGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGA 25187 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | |||||| | || | ||||| ||| || || Sbjct 25186 ATGCCTTCCTTGTCCTG-AATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCAC 25128 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 ||||| || || || |||||||| Sbjct 25127 CTCAAGGGTGATGGTCTTGCCAGT 25104 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| || || ||| ||||| || ||||| ||||||| | || || ||| Sbjct 26257 AGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCC 26198 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || |||||| | ||||| | ||||| || || |||||||||||||| || Sbjct 26197 TCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCC 26138 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||||| | || | ||||| || || ||||| | || || || Sbjct 26137 TG-AATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGT 26079 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | || || ||||| |||||||| Sbjct 26078 CTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630 || || ||||| || | |||| || ||||||||||| ||||| | || | || || Sbjct 26032 CGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGT-GTCCGGCC 25974 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | || || || || | ||||| | ||||| || || || |||||||| || Sbjct 25973 GTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTT 25914 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| || || | || | ||||| || ||| ||||| || |||| Sbjct 25913 GTCTTG-AATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTA 25855 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || | ||| || || || || |||||| Sbjct 25854 TCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385200932303631