Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq256 102 8e-17 seq3328 100 3e-16 seq1350 91.5 1e-13 >seq256 Length=121632 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | ||||||||| ||| | || | ||| |||||||| || ||||||||||||||| Sbjct 86734 TCCTCCAACTGCTTGCCTGCGAAGATCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTG 86675 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | | || || |||| ||||| | Sbjct 86674 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGATTCGACCTCGAGGGTGATG 86615 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || || || |||||||| || ||||| Sbjct 86614 GTCTTACCCGTCAGAGTCTTGACGAA 86589 >seq3328 Length=87304 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||| ||| | || | ||||| || |||||||| Sbjct 25787 GGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCC 25728 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||| ||||| || ||||| |||||||| || ||||| ||| Sbjct 25727 TGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTT 25668 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| | | || || |||| |||| || ||||| || || || Sbjct 25667 GACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGT 25608 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 25607 CTTGACGAAGATTTGCAT 25590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGCCCGCG 133526 ||| || || || |||||||| | || || || || ||||| | |||||| |||||| Sbjct 26009 CTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCG--TCCTCCAACTGCTTACCCGCG 25952 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | || | |||||||||||| || ||||| || |||||||| |||||| ||| | Sbjct 25951 AAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTAACG 25892 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | |||| |||||| | | || || || | || | || || || || || || ||| Sbjct 25891 TTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTT 25832 Query 133647 ACGAAAATCTGCAT 133660 ||||| || ||||| Sbjct 25831 ACGAAGATTTGCAT 25818 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||||||||| || |||||||| || || | | | ||||| |||||||| | Sbjct 26243 GGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCA-TCCTCCAGCTGCTTTC 26185 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || || || || || || || ||||| || Sbjct 26184 CAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTGAATCTTGCTCT 26125 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| | ||| || || | ||||| || || || || |||| Sbjct 26124 TGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTAAGAG 26065 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 26064 TCTTGACAAAGATCTGCAT 26046 >seq1350 Length=581194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| |||||||| ||| | ||| ||| ||||| |||||||| Sbjct 375914 GGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCGTCTTCGAGTTGCTTGCC 375973 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | ||||| ||||| ||||| || ||||||||||||||||| Sbjct 375974 GGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 376018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483397287620840