Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq256 102 8e-17
seq3328 100 3e-16
seq1350 91.5 1e-13
>seq256
Length=121632
Score = 102 bits (112), Expect = 8e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| | ||||||||| ||| | || | ||| |||||||| || |||||||||||||||
Sbjct 86734 TCCTCCAACTGCTTGCCTGCGAAGATCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTG 86675
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||| | | || || |||| ||||| |
Sbjct 86674 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGATTCGACCTCGAGGGTGATG 86615
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| || || |||||||| || |||||
Sbjct 86614 GTCTTACCCGTCAGAGTCTTGACGAA 86589
>seq3328
Length=87304
Score = 100 bits (110), Expect = 3e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||||||||| || ||||| ||| | || | ||||| || ||||||||
Sbjct 25787 GGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCC 25728
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| ||||| ||||| || ||||| |||||||| || ||||| |||
Sbjct 25727 TGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTT 25668
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| |||||| | | || || |||| |||| || ||||| || || ||
Sbjct 25667 GACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGT 25608
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 25607 CTTGACGAAGATTTGCAT 25590
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGCCCGCG 133526
||| || || || |||||||| | || || || || ||||| | |||||| ||||||
Sbjct 26009 CTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCG--TCCTCCAACTGCTTACCCGCG 25952
Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586
| || | |||||||||||| || ||||| || |||||||| |||||| ||| |
Sbjct 25951 AAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTAACG 25892
Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646
| |||| |||||| | | || || || | || | || || || || || || |||
Sbjct 25891 TTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTT 25832
Query 133647 ACGAAAATCTGCAT 133660
||||| || |||||
Sbjct 25831 ACGAAGATTTGCAT 25818
Score = 82.4 bits (90), Expect = 7e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||| ||||||||| || |||||||| || || | | | ||||| |||||||| |
Sbjct 26243 GGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCA-TCCTCCAGCTGCTTTC 26185
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | ||||||||||| || || || || || || || ||||| ||
Sbjct 26184 CAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTGAATCTTGCTCT 26125
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| ||||||| | ||| || || | ||||| || || || || ||||
Sbjct 26124 TGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTAAGAG 26065
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 26064 TCTTGACAAAGATCTGCAT 26046
>seq1350
Length=581194
Score = 91.5 bits (100), Expect = 1e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| |||||||| ||| | ||| ||| ||||| ||||||||
Sbjct 375914 GGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCGTCTTCGAGTTGCTTGCC 375973
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567
||| | ||||| ||||| ||||| || |||||||||||||||||
Sbjct 375974 GGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 376018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483397287620840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |