Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3688 111 4e-19 >seq3688 Length=146739 Score = 111 bits (122), Expect = 4e-19 Identities = 452/697 (65%), Gaps = 19/697 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || |||||||| ||||| || || ||||| | |||||| || | ||| || || | Sbjct 23800 TACTTCGGTTTCAAGACTCTCGAGCGGTCTTATCTGCTTCGTCTCGACGGCAAGGTCGCT 23741 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || | |||||||||||| | | ||||| || |||| || ||| |||| | | Sbjct 23740 GAGAGGCCTCAACACATGATAATGCGTGTCGCTGTTGGCATCTGGGGAGATGACGTCGAG 23681 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGT---AAAAAGAAAGCTATTCATGCTACTCCT 110480 || |||| ||| || | || || ||||| | | | || || | || Sbjct 23680 AAGGTCCTTGAGACCTATAATCT--TATGTCTCAAAAATATTTC-ACCCACGCCTCCCCA 23624 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || || || ||||| || ||| | ||| ||||| || ||||| || | | || Sbjct 23623 ACTCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCGTGCTTCCTCGTTGACATG 23564 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC--TCTTATTTCTA 110598 || || || ||||||||||| || || | ||| |||| |||| ||| || || | Sbjct 23563 AAAGAGGACAGCATTGAAGGTATCTACGACAC-CTTGAAGAC-CTGCGCTCTGATCTCGA 23506 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 | | | ||||| ||||| | || ||||| ||| || | | || | | || | Sbjct 23505 AGACGGCGGGAGGCATTGGGCTGAACATTCATCGTATCCGAGCCACCGGGTCGTACATTG 23446 Query 110659 CAACAGCGAA-GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 | | || |||| || ||| ||| |||| || ||| | | ||||||||| |||| Sbjct 23445 CCGGCACAAACGGGTCCTCGAACGGGA-TTGTGCCTATGCTCCGTGTCTTCAACAACACC 23387 Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || | |||||| | ||||||||| ||| | || | |||||||| || || || Sbjct 23386 GCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTTTGCTATTTACCTTGAG 23327 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 |||||||| | ||| | || || || || || | || || ||||| || || ||| Sbjct 23326 CCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGGAAGGAGGAA 23267 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | || || ||| |||| | || | |||| | ||| | || ||||| |||| | Sbjct 23266 GTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATGAAGCGTG-T 23208 Query 110895 CAAGAA-AATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATG 110952 | |||| || ||| ||| | || | ||||| || || |||| ||||| |||||| Sbjct 23207 CGAGAAGAACGGCGAATGGACACTCTTCTGTCC-CAACGAAGCTCCAGGTCTGGCTGATG 23149 Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989 | || ||| | || ||||||| || || || || || Sbjct 23148 TGTACGGAGACGAATTTGAAGCACTCTATGAGAAGTA 23112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186753633302251