Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq3688 111 4e-19
>seq3688
Length=146739
Score = 111 bits (122), Expect = 4e-19
Identities = 452/697 (65%), Gaps = 19/697 (3%)
Strand=Plus/Minus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| || |||||||| ||||| || || ||||| | |||||| || | ||| || || |
Sbjct 23800 TACTTCGGTTTCAAGACTCTCGAGCGGTCTTATCTGCTTCGTCTCGACGGCAAGGTCGCT 23741
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|| | |||||||||||| | | ||||| || |||| || ||| |||| | |
Sbjct 23740 GAGAGGCCTCAACACATGATAATGCGTGTCGCTGTTGGCATCTGGGGAGATGACGTCGAG 23681
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGT---AAAAAGAAAGCTATTCATGCTACTCCT 110480
|| |||| ||| || | || || ||||| | | | || || | ||
Sbjct 23680 AAGGTCCTTGAGACCTATAATCT--TATGTCTCAAAAATATTTC-ACCCACGCCTCCCCA 23624
Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540
|| || || ||||| || ||| | ||| ||||| || ||||| || | | ||
Sbjct 23623 ACTCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCGTGCTTCCTCGTTGACATG 23564
Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC--TCTTATTTCTA 110598
|| || || ||||||||||| || || | ||| |||| |||| ||| || || |
Sbjct 23563 AAAGAGGACAGCATTGAAGGTATCTACGACAC-CTTGAAGAC-CTGCGCTCTGATCTCGA 23506
Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658
| | | ||||| ||||| | || ||||| ||| || | | || | | || |
Sbjct 23505 AGACGGCGGGAGGCATTGGGCTGAACATTCATCGTATCCGAGCCACCGGGTCGTACATTG 23446
Query 110659 CAACAGCGAA-GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717
| | || |||| || ||| ||| |||| || ||| | | ||||||||| ||||
Sbjct 23445 CCGGCACAAACGGGTCCTCGAACGGGA-TTGTGCCTATGCTCCGTGTCTTCAACAACACC 23387
Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774
|| | |||||| | ||||||||| ||| | || | |||||||| || || ||
Sbjct 23386 GCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTTTGCTATTTACCTTGAG 23327
Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834
|||||||| | ||| | || || || || || | || || ||||| || || |||
Sbjct 23326 CCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGGAAGGAGGAA 23267
Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894
| || || ||| |||| | || | |||| | ||| | || ||||| |||| |
Sbjct 23266 GTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATGAAGCGTG-T 23208
Query 110895 CAAGAA-AATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATG 110952
| |||| || ||| ||| | || | ||||| || || |||| ||||| ||||||
Sbjct 23207 CGAGAAGAACGGCGAATGGACACTCTTCTGTCC-CAACGAAGCTCCAGGTCTGGCTGATG 23149
Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989
| || ||| | || ||||||| || || || || ||
Sbjct 23148 TGTACGGAGACGAATTTGAAGCACTCTATGAGAAGTA 23112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186753633302251
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |