Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3328 113 3e-20 >seq3328 Length=87304 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||||| || | |||||||| ||||| ||||||||||| Sbjct 26045 ACCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACT 25986 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || |||| ||||| || || || || || ||||| |||||||| ||| | || Sbjct 25985 CAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGG 25926 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || || | ||| | ||| | ||||| |||||| | Sbjct 25925 GATACCCTCCTTGTCTTGAATCTT-TGACTTAACGTTGTCAATCGTGTCTGATGATTCGA 25867 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| ||||| || || || | || ||||| ||||| ||||| Sbjct 25866 CTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||||||||||| || ||||||||||| || | || || | || || Sbjct 26255 CACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTC 26196 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || ||||| ||||| ||||| |||||||| ||| | || | ||| ||||| || Sbjct 26195 CAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTG 26136 Query 33660 AAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| || || || || | || | |||||| || || || | |||||||| Sbjct 26135 AATCTTGCTCTT--GACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGATCGTC 26078 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | || || ||||||||||||||| Sbjct 26077 TTTCCAGTAAGAGTCTTGACAAAGATCTGCATA 26045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || ||||| |||||||| |||||||| || || | || || | || Sbjct 25564 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCAAGCTGC 25505 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||||||||||||||||| | || | || |||||||| || || Sbjct 25504 TTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTA 25445 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | ||| || ||||||||| || | ||||| || || || || Sbjct 25444 GCCTTC-ACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTCCCAGT 25386 Query 33726 TAACGTTTTTACAA 33739 | || || |||| Sbjct 25385 GAGGGTCTTGACAA 25372 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| ||||| || |||||| ||| || || ||||| || || || || || || | Sbjct 25295 ACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCC 25236 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | ||||| |||||||| ||||| ||||||||||| | || | ||||| || Sbjct 25235 GTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTT 25176 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || | | |||| ||| | |||||| || ||||| |||| |||| Sbjct 25175 GTCCTGAATCTT-GGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGA 25117 Query 33713 TCGTTTTACCTGT 33725 | || || || || Sbjct 25116 TGGTCTTGCCAGT 25104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688412342720