Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3328 129 1e-24 >seq3328 Length=87304 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| |||||||| |||||||| || || || ||| Sbjct 26049 CAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCCGAC 26108 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||| || ||||| || ||| || ||| || Sbjct 26109 ACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAGCAG 26168 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||||||| |||| ||||| |||||||| | ||||||||| || Sbjct 26169 CGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAACATC 26228 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| || || ||||| || Sbjct 26229 CAGAAAGAGAGCACCCTGCACCTGGT 26254 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| |||||||| || || || ||||| | || || ||| || ||||| | || Sbjct 25604 CAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCAGACACGATTGACAA 25663 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||| || |||||| || | || ||||| Sbjct 25664 TGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCAACAGCGTCTCATCTT 25723 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| |||| ||||| ||||| | |||| |||||| | ||||||||||| Sbjct 25724 CGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAACATTCAGAAAGAGTC 25783 Query 206364 TACTCTTCACCTTGT 206378 ||| || |||||||| Sbjct 25784 TACCCTCCACCTTGT 25798 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| ||||| |||||| || || || |||| Sbjct 25376 CAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCGACAA 25435 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || ||||| || ||| || || || | | ||||| Sbjct 25436 TGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATCTT 25495 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | || ||||| | ||| | |||| |||||| |||| || || || Sbjct 25496 CGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAATC 25555 Query 206364 TACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 25556 CACTCTCCACCTCGT 25570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181761882170611