Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 129 1e-24
>seq3328
Length=87304
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || ||||| |||||||| |||||||| || || || |||
Sbjct 26049 CAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCCGAC 26108
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| | || || ||| |||||||| || ||||| || ||| || ||| ||
Sbjct 26109 ACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAGCAG 26168
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||| || ||||||||| |||| ||||| |||||||| | ||||||||| ||
Sbjct 26169 CGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAACATC 26228
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||| || || ||||| ||
Sbjct 26229 CAGAAAGAGAGCACCCTGCACCTGGT 26254
Score = 100 bits (110), Expect = 7e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| |||||||| || || || ||||| | || || ||| || ||||| | ||
Sbjct 25604 CAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCAGACACGATTGACAA 25663
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||| || || || ||||| || |||||| || | || |||||
Sbjct 25664 TGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCAACAGCGTCTCATCTT 25723
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || ||||| |||| ||||| ||||| | |||| |||||| | |||||||||||
Sbjct 25724 CGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAACATTCAGAAAGAGTC 25783
Query 206364 TACTCTTCACCTTGT 206378
||| || ||||||||
Sbjct 25784 TACCCTCCACCTTGT 25798
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || ||||| || || || ||||| ||||| |||||| || || || ||||
Sbjct 25376 CAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCGACAA 25435
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||| || || ||||| || ||| || || || | | |||||
Sbjct 25436 TGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATCTT 25495
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| |||||| | || ||||| | ||| | |||| |||||| |||| || || ||
Sbjct 25496 CGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAATC 25555
Query 206364 TACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 25556 CACTCTCCACCTCGT 25570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181761882170611
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |