Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1271 111 2e-18
seq332 87.8 3e-11
>seq1271
Length=109735
Score = 111 bits (122), Expect = 2e-18
Identities = 205/296 (69%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||| | |||||| || |||||||| || || || |||||||| || ||| | ||||||
Sbjct 94789 TGGCAGATGTAC-AAGAAGGCCGAAGCGTCATTCTGGACCGCGGAAGAGATTGACCTCTC 94847
Query 1455839 CGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895
|| | | | ||| || || | ||| || || ||| |||||||| ||
Sbjct 94848 GAAAGATTGGCACGATTGGAACAACCGACTCAACGATGATGAACGCTATTTCATCTCCCA 94907
Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955
||||| ||||| ||| || || ||||| ||||| ||||||||| | | ||||
Sbjct 94908 TGTCCTTGCCTTCTTT-GCTGCATCAGATGGTATCGTCAACGAGAACCTCGTTGAGCGCT 94966
Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015
| | || || || | || |||||||| | || ||||| || |||||| || |
Sbjct 94967 TCAGTGGCGAAGTTCAGATACCTGAGGCACGATGCTTCTACGGTTTTCAGATCATGATGG 95026
Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
| ||||||||||| || |||||||| || || |||||||| || ||||||| |||
Sbjct 95027 AGAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACTTATATCAAGGAGCCG 95082
>seq332
Length=83982
Score = 87.8 bits (96), Expect = 3e-11
Identities = 99/129 (77%), Gaps = 4/129 (3%)
Strand=Plus/Minus
Query 165739 CCCCCTATT--TGGCAGACCTGGTCA-CGTGGGGCGCCGTCGGTGCGCGCACCACCGAGA 165795
||||| ||| | || || || ||| |||||| |||||| ||||||||||| || ||||
Sbjct 56015 CCCCCAATTCCTCGCCGATTTGCTCAGCGTGGG-CGCCGTGGGTGCGCGCACTACGGAGA 55957
Query 165796 GCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCA 165855
| ||| |||||||||| ||||||| | ||| | | || |||| ||||| ||| |||
Sbjct 55956 GTCAGTTGCACCGCGAATTGGCGTCCGGGCTCTCCTTCCCGGTTGGATTCAAGAACGGCA 55897
Query 165856 CCGACGGCA 165864
| |||||||
Sbjct 55896 CAGACGGCA 55888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177435905898342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |