Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1271 111 2e-18 seq332 87.8 3e-11 >seq1271 Length=109735 Score = 111 bits (122), Expect = 2e-18 Identities = 205/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| || |||||||| || || || |||||||| || ||| | |||||| Sbjct 94789 TGGCAGATGTAC-AAGAAGGCCGAAGCGTCATTCTGGACCGCGGAAGAGATTGACCTCTC 94847 Query 1455839 CGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || | | | ||| || || | ||| || || ||| |||||||| || Sbjct 94848 GAAAGATTGGCACGATTGGAACAACCGACTCAACGATGATGAACGCTATTTCATCTCCCA 94907 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||||| ||||| ||| || || ||||| ||||| ||||||||| | | |||| Sbjct 94908 TGTCCTTGCCTTCTTT-GCTGCATCAGATGGTATCGTCAACGAGAACCTCGTTGAGCGCT 94966 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | | || || || | || |||||||| | || ||||| || |||||| || | Sbjct 94967 TCAGTGGCGAAGTTCAGATACCTGAGGCACGATGCTTCTACGGTTTTCAGATCATGATGG 95026 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 | ||||||||||| || |||||||| || || |||||||| || ||||||| ||| Sbjct 95027 AGAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACTTATATCAAGGAGCCG 95082 >seq332 Length=83982 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/129 (77%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 165739 CCCCCTATT--TGGCAGACCTGGTCA-CGTGGGGCGCCGTCGGTGCGCGCACCACCGAGA 165795 ||||| ||| | || || || ||| |||||| |||||| ||||||||||| || |||| Sbjct 56015 CCCCCAATTCCTCGCCGATTTGCTCAGCGTGGG-CGCCGTGGGTGCGCGCACTACGGAGA 55957 Query 165796 GCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCA 165855 | ||| |||||||||| ||||||| | ||| | | || |||| ||||| ||| ||| Sbjct 55956 GTCAGTTGCACCGCGAATTGGCGTCCGGGCTCTCCTTCCCGGTTGGATTCAAGAACGGCA 55897 Query 165856 CCGACGGCA 165864 | ||||||| Sbjct 55896 CAGACGGCA 55888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177435905898342