Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 141 8e-29
seq256 114 1e-20
>seq3328
Length=87304
Score = 141 bits (156), Expect = 8e-29
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | || | ||||| || ||||| ||||||||||||||||||||||| |
Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| |||| |||||||||||| || ||||||||||||||||| | ||
Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | ||||||||| |||||| ||| | |||| | | |||||| ||||| ||
Sbjct 25924 ATACCCTCCTTGTCTTGAATCTTTGACTT-AACGTTGTCAATCGTGTCTGATGATTCGAC 25866
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|||| ||| ||||| || ||||| | || || || || || |||||||
Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATTC 25816
Score = 109 bits (120), Expect = 5e-19
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | ||| | ||||| || | || ||||| || || ||||||||||| | |
Sbjct 26272 CCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGAC 26213
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || ||||||||||| || ||||| ||||| ||||||||||| | |||
Sbjct 26212 AAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGA 26153
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686
| | ||| || ||| ||||| ||| | | | | ||||| |||| ||
Sbjct 26152 ATACCCTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTC---TCA 26096
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||| |||||||| || || || | ||| || ||||| ||||||||
Sbjct 26095 ACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 102 bits (112), Expect = 7e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|||||||| |||||||| |||| | || ||| | || || |||||||| || || ||
Sbjct 25552 TCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAG 25493
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| |||||||| || | ||||| || ||| |||||| |||||| ||||| | |
Sbjct 25492 ATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTG 25433
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || ||||||||||||| ||||| || || || || | || || |||
Sbjct 25432 TCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGACA 25373
Query 35726 A 35726
|
Sbjct 25372 A 25372
>seq256
Length=121632
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | || || | || |||| |||||| || || || |
Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||||||| |||||||||| || | || ||||||||| |||||| ||| | | |
Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||||||||||| ||||| | ||||| || |||||||||| ||| || || |
Sbjct 86649 CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGA 86590
Query 35727 A 35727
|
Sbjct 86589 A 86589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450771674526280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |