Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1271 111 2e-19 seq3688 89.7 6e-13 >seq1271 Length=109735 Score = 111 bits (122), Expect = 2e-19 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || |||||||| || || |||||||| || |||||| || || Sbjct 95393 GGCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCC 95334 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 ||||| |||||||||||||| | ||| |||| | ||| || || ||| |||||| | Sbjct 95333 CGGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCA-AAGGAACCGCTGAAGAAAA 95275 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCA 122835 ||||||||||| || || |||| ||||||| ||||||| || | ||| | | Sbjct 95274 TACCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGGTAGAG-TTCTTGTCTTGG 95216 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTT 122864 | |||||| || ||||| | || ||||| Sbjct 95215 ATCCATTTGATAGCCCAGTCTGCTTTCTT 95187 >seq3688 Length=146739 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| || |||| || || | || ||||||||||| || || |||||| | || Sbjct 22811 GACGTAAGTTGGTAGTGCAAGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGT 22870 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| | |||||| || || || || || || ||| ||||| | |||||| ||||| Sbjct 22871 ATACTCGATAATTTCGGTGCACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTT 22930 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||||| |||||| || |||||||| | ||| | || | || ||||||||||| Sbjct 22931 GCTCTTGCGGTTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTG 22987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628001454093600