Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3773 280 4e-70 seq3328 140 1e-27 seq3616 131 5e-25 seq1891 96.9 1e-14 seq1402 91.5 4e-13 >seq3773 Length=51578 Score = 280 bits (310), Expect = 4e-70 Identities = 940/1451 (65%), Gaps = 14/1451 (1%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || || ||||| || || || |||||||| |||| | | | | |||| | Sbjct 19583 CCGCAATTGGCATTGATTTGGGGACGACGTATTCTTGCGTTGGTATCTTCCGCGATGACC 19524 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | ||||| ||||| || || || || ||| |||| || || || | |||||| || | Sbjct 19523 GGATTGAAATCATTGCCAACGACCAGGGAAACCGAACCACTCCGTCGTTCGTTGCTTTCA 19464 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| ||||||||| | || ||||| || || || ||||||| || || || | || Sbjct 19463 CCGACACTGAGCGTCTCATCGGTGACTCAGCCAAGAATCAAGTCGCCATGAACCCGACAA 19404 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACA 349434 | || || || ||||| ||||| || || ||| | | || |||| | | | || Sbjct 19403 ACACCGTCTTCGATGCCAAGCGTCTCATCGGTCGCAAATTCGCTGATGCTGAGGTTCAGG 19344 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 | || | || || || || || | ||||| | ||||| | | || || ||| | | Sbjct 19343 --CCGACATGAAGCACTTCCCGTTCAAGGTTGT-CGAAAAGGCCG-GA-AAGCCAGTCGT 19289 Query 349495 TGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553 |||| || | || || || || || || || ||| ||||| || || ||||||| Sbjct 19288 CCAGGTCGAGTTCAAGGGCGAGACCAAGTCA-TTCACACCAGAAGAGATCTCCTCAATGG 19230 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 | ||| || |||| ||| | ||| ||| | || | || | ||||| | |||| | Sbjct 19229 TCTTAACAAAGATGAGGGAGACTGCCGAATCGTACCTGGGAGGGACAGTCAACAATGCCG 19170 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | | || || || |||||||| || || | || ||| |||||||||||||| || Sbjct 19169 TGGTGACAGTCCCCGCCTATTTCAACGACTCTCAACGTCAAGCAACAAAAGATGCCGGTC 19110 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 ||| || || | || |||||| | || || || ||||||||||| || || || || | Sbjct 19109 TCATCGCTGGTCTCAACGTTCTACGTATCATCAACGAACCCACTGCCGCTGCCATCGCCT 19050 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || || || ||| |||| || || || || || |||| Sbjct 19049 ACGGTCTCGACAAGAAGACCGAGGGCGAGCGCAATGTTCTCATCTTCGACTTGGGCGGTG 18990 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 | ||||| ||||| || || | || | || ||||| || || || || || | |||| Sbjct 18989 GAACTTTCGATGTCTCGCTGTTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCGACTG 18930 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 | ||||| || || | || || || || || || || ||||| || || || || | Sbjct 18929 CCGGTGACACTCACTTGGGCGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTGA 18870 Query 349914 AAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972 || || ||||| |||| || | || || || || | || | ||||| Sbjct 18869 CCGAGTTCAAGCG-GAAGCACAAGAAAGACCTTTCCACCAACGCTCGTGCTCTCCGTCGT 18811 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || |||| || || || || || |||||| || | ||||| | | |||||||| || Sbjct 18810 CTCCGAACAGCTTGCGAGCGGGCCAAGCGTACCCTTTCATCATCCGCACAAACCTCAATC 18751 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 |||||||| || || || |||| || |||| | || || || |||||||| || Sbjct 18750 GAAATTGACTCCCTCTACGAAGGCATCGACTTCTACACCTCCATCACCCGTGCTCGTTTC 18691 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | || ||| || || | | || ||||| || || || || | Sbjct 18690 GAGGAGCTTTGCCAGGACCTCTTCCGCTCTACTATGGAGCCAGTTGAGCGTGTTCTCCGT 18631 Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 || || || || ||| | || |||| | || || || |||||||| || ||| Sbjct 18630 GACGCCAAGATCGACAAGTCTTCCGTTCATGAGATCGTCTTGGTCGGTGGTTCCACTCGT 18571 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA 350272 || || || | || || | | || || || || || || || || || | || Sbjct 18570 ATCCCCAAGATCCAGAAGCTTGTTTCGGACTTCTTCAACGGTAAGGAGCCAAACAAGTCG 18511 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332 || || || || || ||||| ||||| |||||||| |||||||| ||||| | || || Sbjct 18510 ATCAACCCCGACGAGGCTGTCGCATACGGTGCTGCAGTTCAGGCCGCTATTCTCTCCGGC 18451 Query 350333 AATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 | | ||| || | | || | | || || ||||| | ||| | || | Sbjct 18450 GACACTTCTTCCAAGTCCACCAACGAAATCCTCCTTCTCGATGTCTCCCCATTGTCCGTC 18391 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449 || | || || |||||| |||||||| | || || | || | ||| | || Sbjct 18390 GGTATCGAGACCGCTGGTGGTGTAATGACCGCCCTCATCAAGCGCAACACCACTATCCCG 18331 Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509 || || |||||| | ||| || || || | || || ||||||| || || ||| Sbjct 18330 ACCAAGAAGTCCGAGGTTTTCTCCACTTTCTCCGACAACCAGCCAGGTGTGTTGATCCAA 18271 Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569 || || || || || ||||| || || || || || || ||| || | || || Sbjct 18270 GTCTTCGAGGGCGAGCGTGCCCGTACCAAGGACAACAACCTACTGGGCAAGTTCGAGCTC 18211 Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629 | || |||||||| || | || ||||||||||| || ||| | |||||| | || Sbjct 18210 ACTGGTATTCCACCCGCCCCGCGTGGTGTTCCTCAGATCGAGGTCACCTTCGATGTCGAC 18151 Query 350630 TCAAATGGTAT 350640 | || ||||| Sbjct 18150 GCCAACGGTAT 18140 >seq3328 Length=87304 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | | || ||||| || || ||||||||||| ||||| || | Sbjct 25824 TTTGCATTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGT 25765 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||| | |||||| || ||||| || || || ||||| ||||| || || | Sbjct 25764 AGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGT 25705 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| |||||||| || || | || ||||| ||||||| || || | Sbjct 25704 CCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACG 25645 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| | ||||| || || || || || || || || ||||| Sbjct 25644 ATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 136 bits (150), Expect = 1e-26 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | || || || || || || || |||||| || || || ||||| || Sbjct 26273 ACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGA 26214 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || || || |||||||||||||| | || ||||| || || || Sbjct 26213 CAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 26154 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688 ||| || |||||||||||||| || ||| || || |||||||| | || || |||| Sbjct 26153 AATACCCTCTTTATCCTGAATCTT-GCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAA 26095 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || | |||||||| || || || || ||||| |||||||| Sbjct 26094 CTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 >seq3616 Length=361826 Score = 131 bits (144), Expect = 5e-25 Identities = 470/719 (65%), Gaps = 21/719 (3%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || ||||||||||| || || || || || ||| ||| ||||||||||| ||| Sbjct 327892 GCCGTCATTACTGTACCTGCTTACTTCAACGACAACCAACGTCAGGCAACAAAAGACGCT 327833 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| |||||| | | | || || | || || ||||||||||| ||||| || ||| Sbjct 327832 GGCGCCATTGCTGATCTGCAAGTCCTCCGGATCATCAATGAACCCACCGCTGCCGCGATT 327773 Query 349730 GCATATGGGCT-TGAT----AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 || || || || ||| || | || || | || |||| |||| || | ||| Sbjct 327772 GCGTACGGTCTGGGATCCGGCAAGTCAGAGA--AGGAGCGAAATGTTCTAATCTACGATC 327715 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG-GGAATTTTTGAAGTT 349843 | ||||| || ||||||||||| || || || ||| | || | || ||||| || Sbjct 327714 TTGGTGGAGGGACTTTTGATGTGTCTCTTCT-CCACATCCAGGGTGGTGTTTTTACCGTC 327656 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903 || || |||||||| ||||| ||| | ||||| | || || || | || || | Sbjct 327655 AAGGCGACTGCTGGCGATACTCATTTGGGTGGTCAGGACTTCGACACAAACCTGCTTGAG 327596 Query 349904 CATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGC 349962 || || || ||||| |||| |||| | || | || || | | || | || Sbjct 327595 CACTTCAAGAAGGAATTCCAGCG-CAAGACCAAGAAAGACATGTCGGGCGACCCACGTGC 327537 Query 349963 AATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCA 350022 |||| || || | || || ||||| ||||||||||| | |||| | ||| || Sbjct 327536 TCTGCGGCGTCTTCGGACGGCTTGTGAGCGTGCTAAGCGCACGCTATCCAATGGTACTCA 327477 Query 350023 AACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACG 350082 ||| || | ||||| || || || ||||||| |||| ||| | ||||| || Sbjct 327476 AACTACTGTCGAAATCGACTCCCTCTTTGATGGCGAAGACTTCAACGCTCAAATTACCCG 327417 Query 350083 TGCTCGGTTTGAAGAATT--ATG-TATGGATCTTTTTAGAGCAACAATGGATCCTGTGGA 350139 |||||| ||||| || | | | | || | || | || ||||| || || || | Sbjct 327416 TGCTCGATTTGAGGACCTCAACGCCAAGG--CCTTCAATGGC-ACAATCGACCCCGTTCA 327360 Query 350140 AAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGG 350199 | || | ||||||||||| || ||| | | | | || ||| | || | ||||| Sbjct 327359 GCAGGTTATGAAAGATGCAAACTTGGACAAGAGTAAAGTGGACGAAATTGTACTCGTTGG 327300 Query 350200 TGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGA 350259 ||| ||||| ||||| || | | || || | || || | || | || |||| Sbjct 327299 TGGATCTACCCGTATCCCCAGGATACAGAAGCTTCTTAGCGATTACTTCGACGG-GAAGA 327241 Query 350260 ACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | | || ||| | || || || || || |||||||| || ||||| ||||||||||| Sbjct 327240 AGC-TCGAGAAGAGCATCAACCCTGACGAGGCTGTTGCCTACGGTGCCGCTGTTCAGGC 327183 >seq1891 Length=98495 Score = 96.9 bits (106), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 377450 CTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGA 377509 |||||| ||| || ||||| |||| || ||| || || | ||||||||||| |||| Sbjct 23612 CTTCAA-GCGGGGAACACCCAGTGTGACGTTC---TTCGAAGAGACACCAGCAAAATGGA 23557 Query 377510 AAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAA 377569 | || || ||||| | ||| |||| ||||||||||| || || || || | || |||| Sbjct 23556 ATGTGTTCAGAGTCATTTGTGTAGCTGGCTCACCAATCGATTGTGCGGCTAGCACACCAA 23497 Query 377570 CCATTTCTCCAGGATTGACAATAGCC 377595 |||| |||||||| || ||| | ||| Sbjct 23496 CCATCTCTCCAGGGTTCACAGTCGCC 23471 >seq1402 Length=304299 Score = 91.5 bits (100), Expect = 4e-13 Identities = 246/373 (66%), Gaps = 5/373 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 || |||||| |||| | ||||| | | || |||||||| || || || ||| || | Sbjct 236838 CCTGAAGAAGTTTCCGCCATGGTCCTTGGGAAGATGAAGGAGATCGCCGAGAGC-TACCT 236896 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||| | | ||| | | || ||| | || || ||||| || || || || |||| | Sbjct 236897 AGGGAAGAAGGTAGATCACGCCGTTGTCACCGTCCCAGCATACTTCAACGACAACCAGAG 236956 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 || ||||| || |||||| |||||| || || || ||||| | | | || || Sbjct 236957 GCAAGCTACAAAGGACGCTGGCGTCATTGCTGGTTTGAACGTTCTCCGCGTCGTCAACGA 237016 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 ||||| || || || || ||||| || || || || | | | || ||| | || Sbjct 237017 GCCCACCGCGGCCGCGATCGCATACGGTCTGGACAAGAAGGGCGA---AGAGCGCCAGAT 237073 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 | | | |||||| || || || || || ||||| || || || | |||| | || Sbjct 237074 CATCGTGTATGATTTGGGCGGAGGAACCTTCGATGTCTCCCTCCTCTCCATTGACAATGG 237133 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | || || || | ||||| ||||||||||| || | || ||||| ||||| ||| | Sbjct 237134 TGTGTTCGAGGTCATGGCAACAGCTGGTGATACCCACTTGGGAGGAGAGGATTTCGATCA 237193 Query 349891 TCGTCTCGTTTCG 349903 || || ||||| Sbjct 237194 GCGCGTCATTTCG 237206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515178859359473