Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3773 280 4e-70
seq3328 140 1e-27
seq3616 131 5e-25
seq1891 96.9 1e-14
seq1402 91.5 4e-13
>seq3773
Length=51578
Score = 280 bits (310), Expect = 4e-70
Identities = 940/1451 (65%), Gaps = 14/1451 (1%)
Strand=Plus/Minus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
|||| || || || ||||| || || || |||||||| |||| | | | | |||| |
Sbjct 19583 CCGCAATTGGCATTGATTTGGGGACGACGTATTCTTGCGTTGGTATCTTCCGCGATGACC 19524
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | ||||| ||||| || || || || ||| |||| || || || | |||||| || |
Sbjct 19523 GGATTGAAATCATTGCCAACGACCAGGGAAACCGAACCACTCCGTCGTTCGTTGCTTTCA 19464
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
|||| ||||||||| | || ||||| || || || ||||||| || || || | ||
Sbjct 19463 CCGACACTGAGCGTCTCATCGGTGACTCAGCCAAGAATCAAGTCGCCATGAACCCGACAA 19404
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACA 349434
| || || || ||||| ||||| || || ||| | | || |||| | | | ||
Sbjct 19403 ACACCGTCTTCGATGCCAAGCGTCTCATCGGTCGCAAATTCGCTGATGCTGAGGTTCAGG 19344
Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494
| || | || || || || || | ||||| | ||||| | | || || ||| | |
Sbjct 19343 --CCGACATGAAGCACTTCCCGTTCAAGGTTGT-CGAAAAGGCCG-GA-AAGCCAGTCGT 19289
Query 349495 TGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553
|||| || | || || || || || || || ||| ||||| || || |||||||
Sbjct 19288 CCAGGTCGAGTTCAAGGGCGAGACCAAGTCA-TTCACACCAGAAGAGATCTCCTCAATGG 19230
Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613
| ||| || |||| ||| | ||| ||| | || | || | ||||| | |||| |
Sbjct 19229 TCTTAACAAAGATGAGGGAGACTGCCGAATCGTACCTGGGAGGGACAGTCAACAATGCCG 19170
Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673
| | || || || |||||||| || || | || ||| |||||||||||||| ||
Sbjct 19169 TGGTGACAGTCCCCGCCTATTTCAACGACTCTCAACGTCAAGCAACAAAAGATGCCGGTC 19110
Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733
||| || || | || |||||| | || || || ||||||||||| || || || || |
Sbjct 19109 TCATCGCTGGTCTCAACGTTCTACGTATCATCAACGAACCCACTGCCGCTGCCATCGCCT 19050
Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793
| || || || || | || || || ||| |||| || || || || || ||||
Sbjct 19049 ACGGTCTCGACAAGAAGACCGAGGGCGAGCGCAATGTTCTCATCTTCGACTTGGGCGGTG 18990
Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853
| ||||| ||||| || || | || | || ||||| || || || || || | ||||
Sbjct 18989 GAACTTTCGATGTCTCGCTGTTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCGACTG 18930
Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913
| ||||| || || | || || || || || || || ||||| || || || || |
Sbjct 18929 CCGGTGACACTCACTTGGGCGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTGA 18870
Query 349914 AAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972
|| || ||||| |||| || | || || || || | || | |||||
Sbjct 18869 CCGAGTTCAAGCG-GAAGCACAAGAAAGACCTTTCCACCAACGCTCGTGCTCTCCGTCGT 18811
Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032
|| |||| || || || || || |||||| || | ||||| | | |||||||| ||
Sbjct 18810 CTCCGAACAGCTTGCGAGCGGGCCAAGCGTACCCTTTCATCATCCGCACAAACCTCAATC 18751
Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092
|||||||| || || || |||| || |||| | || || || |||||||| ||
Sbjct 18750 GAAATTGACTCCCTCTACGAAGGCATCGACTTCTACACCTCCATCACCCGTGCTCGTTTC 18691
Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152
|| || | || ||| || || | | || ||||| || || || || |
Sbjct 18690 GAGGAGCTTTGCCAGGACCTCTTCCGCTCTACTATGGAGCCAGTTGAGCGTGTTCTCCGT 18631
Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212
|| || || || ||| | || |||| | || || || |||||||| || |||
Sbjct 18630 GACGCCAAGATCGACAAGTCTTCCGTTCATGAGATCGTCTTGGTCGGTGGTTCCACTCGT 18571
Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA 350272
|| || || | || || | | || || || || || || || || || | ||
Sbjct 18570 ATCCCCAAGATCCAGAAGCTTGTTTCGGACTTCTTCAACGGTAAGGAGCCAAACAAGTCG 18511
Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332
|| || || || || ||||| ||||| |||||||| |||||||| ||||| | || ||
Sbjct 18510 ATCAACCCCGACGAGGCTGTCGCATACGGTGCTGCAGTTCAGGCCGCTATTCTCTCCGGC 18451
Query 350333 AATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389
| | ||| || | | || | | || || ||||| | ||| | || |
Sbjct 18450 GACACTTCTTCCAAGTCCACCAACGAAATCCTCCTTCTCGATGTCTCCCCATTGTCCGTC 18391
Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449
|| | || || |||||| |||||||| | || || | || | ||| | ||
Sbjct 18390 GGTATCGAGACCGCTGGTGGTGTAATGACCGCCCTCATCAAGCGCAACACCACTATCCCG 18331
Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509
|| || |||||| | ||| || || || | || || ||||||| || || |||
Sbjct 18330 ACCAAGAAGTCCGAGGTTTTCTCCACTTTCTCCGACAACCAGCCAGGTGTGTTGATCCAA 18271
Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569
|| || || || || ||||| || || || || || || ||| || | || ||
Sbjct 18270 GTCTTCGAGGGCGAGCGTGCCCGTACCAAGGACAACAACCTACTGGGCAAGTTCGAGCTC 18211
Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629
| || |||||||| || | || ||||||||||| || ||| | |||||| | ||
Sbjct 18210 ACTGGTATTCCACCCGCCCCGCGTGGTGTTCCTCAGATCGAGGTCACCTTCGATGTCGAC 18151
Query 350630 TCAAATGGTAT 350640
| || |||||
Sbjct 18150 GCCAACGGTAT 18140
>seq3328
Length=87304
Score = 140 bits (154), Expect = 1e-27
Identities = 172/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| || ||||| | | || ||||| || || ||||||||||| ||||| || |
Sbjct 25824 TTTGCATTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGT 25765
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | ||| | |||||| || ||||| || || || ||||| ||||| || || |
Sbjct 25764 AGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGT 25705
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || ||||| |||||||| || || | || ||||| ||||||| || || |
Sbjct 25704 CCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACG 25645
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || ||||| | ||||| || || || || || || || || |||||
Sbjct 25644 ATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 136 bits (150), Expect = 1e-26
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | || || || || || || || |||||| || || || ||||| ||
Sbjct 26273 ACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGA 26214
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || ||||| || || || |||||||||||||| | || ||||| || || ||
Sbjct 26213 CAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 26154
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688
||| || |||||||||||||| || ||| || || |||||||| | || || ||||
Sbjct 26153 AATACCCTCTTTATCCTGAATCTT-GCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAA 26095
Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| | || | |||||||| || || || || ||||| ||||||||
Sbjct 26094 CTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
>seq3616
Length=361826
Score = 131 bits (144), Expect = 5e-25
Identities = 470/719 (65%), Gaps = 21/719 (3%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || ||||||||||| || || || || || ||| ||| ||||||||||| |||
Sbjct 327892 GCCGTCATTACTGTACCTGCTTACTTCAACGACAACCAACGTCAGGCAACAAAAGACGCT 327833
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
||| |||||| | | | || || | || || ||||||||||| ||||| || |||
Sbjct 327832 GGCGCCATTGCTGATCTGCAAGTCCTCCGGATCATCAATGAACCCACCGCTGCCGCGATT 327773
Query 349730 GCATATGGGCT-TGAT----AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784
|| || || || ||| || | || || | || |||| |||| || | |||
Sbjct 327772 GCGTACGGTCTGGGATCCGGCAAGTCAGAGA--AGGAGCGAAATGTTCTAATCTACGATC 327715
Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG-GGAATTTTTGAAGTT 349843
| ||||| || ||||||||||| || || || ||| | || | || ||||| ||
Sbjct 327714 TTGGTGGAGGGACTTTTGATGTGTCTCTTCT-CCACATCCAGGGTGGTGTTTTTACCGTC 327656
Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903
|| || |||||||| ||||| ||| | ||||| | || || || | || || |
Sbjct 327655 AAGGCGACTGCTGGCGATACTCATTTGGGTGGTCAGGACTTCGACACAAACCTGCTTGAG 327596
Query 349904 CATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGC 349962
|| || || ||||| |||| |||| | || | || || | | || | ||
Sbjct 327595 CACTTCAAGAAGGAATTCCAGCG-CAAGACCAAGAAAGACATGTCGGGCGACCCACGTGC 327537
Query 349963 AATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCA 350022
|||| || || | || || ||||| ||||||||||| | |||| | ||| ||
Sbjct 327536 TCTGCGGCGTCTTCGGACGGCTTGTGAGCGTGCTAAGCGCACGCTATCCAATGGTACTCA 327477
Query 350023 AACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACG 350082
||| || | ||||| || || || ||||||| |||| ||| | ||||| ||
Sbjct 327476 AACTACTGTCGAAATCGACTCCCTCTTTGATGGCGAAGACTTCAACGCTCAAATTACCCG 327417
Query 350083 TGCTCGGTTTGAAGAATT--ATG-TATGGATCTTTTTAGAGCAACAATGGATCCTGTGGA 350139
|||||| ||||| || | | | | || | || | || ||||| || || || |
Sbjct 327416 TGCTCGATTTGAGGACCTCAACGCCAAGG--CCTTCAATGGC-ACAATCGACCCCGTTCA 327360
Query 350140 AAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGG 350199
| || | ||||||||||| || ||| | | | | || ||| | || | |||||
Sbjct 327359 GCAGGTTATGAAAGATGCAAACTTGGACAAGAGTAAAGTGGACGAAATTGTACTCGTTGG 327300
Query 350200 TGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGA 350259
||| ||||| ||||| || | | || || | || || | || | || ||||
Sbjct 327299 TGGATCTACCCGTATCCCCAGGATACAGAAGCTTCTTAGCGATTACTTCGACGG-GAAGA 327241
Query 350260 ACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
| | || ||| | || || || || || |||||||| || ||||| |||||||||||
Sbjct 327240 AGC-TCGAGAAGAGCATCAACCCTGACGAGGCTGTTGCCTACGGTGCCGCTGTTCAGGC 327183
>seq1891
Length=98495
Score = 96.9 bits (106), Expect = 1e-14
Identities = 110/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 377450 CTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGA 377509
|||||| ||| || ||||| |||| || ||| || || | ||||||||||| ||||
Sbjct 23612 CTTCAA-GCGGGGAACACCCAGTGTGACGTTC---TTCGAAGAGACACCAGCAAAATGGA 23557
Query 377510 AAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAA 377569
| || || ||||| | ||| |||| ||||||||||| || || || || | || ||||
Sbjct 23556 ATGTGTTCAGAGTCATTTGTGTAGCTGGCTCACCAATCGATTGTGCGGCTAGCACACCAA 23497
Query 377570 CCATTTCTCCAGGATTGACAATAGCC 377595
|||| |||||||| || ||| | |||
Sbjct 23496 CCATCTCTCCAGGGTTCACAGTCGCC 23471
>seq1402
Length=304299
Score = 91.5 bits (100), Expect = 4e-13
Identities = 246/373 (66%), Gaps = 5/373 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590
|| |||||| |||| | ||||| | | || |||||||| || || || ||| || |
Sbjct 236838 CCTGAAGAAGTTTCCGCCATGGTCCTTGGGAAGATGAAGGAGATCGCCGAGAGC-TACCT 236896
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
||| | | ||| | | || ||| | || || ||||| || || || || |||| |
Sbjct 236897 AGGGAAGAAGGTAGATCACGCCGTTGTCACCGTCCCAGCATACTTCAACGACAACCAGAG 236956
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
|| ||||| || |||||| |||||| || || || ||||| | | | || ||
Sbjct 236957 GCAAGCTACAAAGGACGCTGGCGTCATTGCTGGTTTGAACGTTCTCCGCGTCGTCAACGA 237016
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770
||||| || || || || ||||| || || || || | | | || ||| | ||
Sbjct 237017 GCCCACCGCGGCCGCGATCGCATACGGTCTGGACAAGAAGGGCGA---AGAGCGCCAGAT 237073
Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830
| | | |||||| || || || || || ||||| || || || | |||| | ||
Sbjct 237074 CATCGTGTATGATTTGGGCGGAGGAACCTTCGATGTCTCCCTCCTCTCCATTGACAATGG 237133
Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || || || | ||||| ||||||||||| || | || ||||| ||||| ||| |
Sbjct 237134 TGTGTTCGAGGTCATGGCAACAGCTGGTGATACCCACTTGGGAGGAGAGGATTTCGATCA 237193
Query 349891 TCGTCTCGTTTCG 349903
|| || |||||
Sbjct 237194 GCGCGTCATTTCG 237206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515178859359473
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