Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3688 150 2e-31 seq71 84.2 2e-11 >seq3688 Length=146739 Score = 150 bits (166), Expect = 2e-31 Identities = 372/557 (67%), Gaps = 8/557 (1%) Strand=Plus/Minus Query 53173 TGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACAC 53232 ||||| |||||| | | | ||||| ||||| | || ||| || || ||| | Sbjct 23741 TGAGAGGCCTCAACACATGATAATGCGTGTCGCTGTTGGCATCTGGGGAGATGACGTCGA 23682 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 | |||| |||||| || | | ||| ||||| || || || |||||| | ||||| Sbjct 23681 GAAGGTCCTTGAGACCTATAATCTTATGTCTCAAAAATATTTCACCCACGCCTCCCCAAC 23622 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || |||||||||||||| || || ||| || | |||||||| || | ||||| Sbjct 23621 TCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCGTGCTTCCTCGTTGACATGAA 23562 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 || ||| || || || |||||||| || | ||| || || | ||||| ||| Sbjct 23561 AGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACCTGCGCTCTGATCTCGAAGAC 23502 Query 53413 GTCGGGTGGTATCGGTATCCAC--TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAG 53470 | |||| || || || | || | ||| | |||| || | ||| | || Sbjct 23501 GGCGGGAGGCATTGGGCTGAACATTCATCGTA--TCCGAGCCACCGGGTCGTACATTGCC 23444 Query 53471 GGGACGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 || || ||||| ||| ||| || || |||||||||||||| |||||||||||||| || Sbjct 23443 GGCACAAACGG-GTCCTCGAACGGGATTGTGCCTATGCTCCGTGTCTTCAACAACACCGC 23385 Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || ||| |||| |||||| ||||| | ||| | |||| || || ||||| |||| Sbjct 23384 GAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTG-CGTTTGCTATTTACCTTGAGC 23326 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 | ||||||||||| | | |||||| | || |||| |||||| || | || || Sbjct 23325 CTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGGAAGGAGGAAG 23266 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 | ||| || || || || ||||| |||| || || || || ||| | || | Sbjct 23265 TCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATGAAGCGTGTCG 23206 Query 53709 AGAAGGACGAGGAGTGG 53725 ||||| ||| || ||| Sbjct 23205 AGAAGAACGGCGAATGG 23189 Score = 100 bits (110), Expect = 3e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGA 55784 |||||| | ||| ||| || ||||||||| ||||| | ||||| | ||| Sbjct 22146 TCAAGGCTTTATACAAGACAGTCTGGGAGATTTCACAGCGAAC---GATTGTACAGATGG 22090 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 ||| ||||| ||||||| |||||||||||| |||||||| |||||| | | || | | Sbjct 22089 CTGCCGATCGCGGTGCGTTCATCGACCAGTCTCAGTCTCTCAACATCCACCTAAAGGACC 22030 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | || ||| ||| | | | ||||||||| || |||||| || |||||||| | Sbjct 22029 CAACAATGGGGAAGATCACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCTCAAGACTG 21970 Query 55905 GTATGTACTATCTGCGGACC 55924 | ||||||||||| || ||| Sbjct 21969 GGATGTACTATCTCCGAACC 21950 >seq71 Length=73752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 |||||| ||||||| || | |||||| ||| |||| ||| ||||| ||||||| Sbjct 24232 CGCGTGTAGATGTAACGAGCGCTGGCACAATCGCTGCCTCCTTGGAGCCGACTTCCAAAA 24291 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || |||||||| ||||| |||||| | || |||||| ||||||||||| Sbjct 24292 TTACCGCTAGGCTCGAGACAGTTGACGTTGTTCGATCCGACGAAAGTCTGAGCCAAACCG 24351 Query 152146 ACAATCGTGCCCTGCAGA-CTCGCTTCACCGTGGTGATACGCCGT-CTGCTCCGCGATGT 152203 ||||| || ||||||| | || || || || |||||| | || ||| | | | || Sbjct 24352 ACAATGGTCTGCTGCAGAGATTGC-TCGCCATGCTGATACCCTGTGATGC-CAGATACGT 24409 Query 152204 ATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAA 152263 | || || | || |||| |||||||| | ||| ||| ||||| || || | | Sbjct 24410 AACCTGCAAGCTCAACCACTTTCATGTCTTTTCTCACGTTTCGCTTGAAGCATGCAAATA 24469 Query 152264 TCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 ||||| || || ||| || | || || || || |||||||| || Sbjct 24470 GAACCTTCCGTTGCCCTGGCTTAAGTCCATCGACGACAGAGGGAATCGACCG 24521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189384781800