Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3688 150 2e-31
seq71 84.2 2e-11
>seq3688
Length=146739
Score = 150 bits (166), Expect = 2e-31
Identities = 372/557 (67%), Gaps = 8/557 (1%)
Strand=Plus/Minus
Query 53173 TGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACAC 53232
||||| |||||| | | | ||||| ||||| | || ||| || || ||| |
Sbjct 23741 TGAGAGGCCTCAACACATGATAATGCGTGTCGCTGTTGGCATCTGGGGAGATGACGTCGA 23682
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
| |||| |||||| || | | ||| ||||| || || || |||||| | |||||
Sbjct 23681 GAAGGTCCTTGAGACCTATAATCTTATGTCTCAAAAATATTTCACCCACGCCTCCCCAAC 23622
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
|| |||||||||||||| || || ||| || | |||||||| || | |||||
Sbjct 23621 TCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCGTGCTTCCTCGTTGACATGAA 23562
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
|| ||| || || || |||||||| || | ||| || || | ||||| |||
Sbjct 23561 AGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACCTGCGCTCTGATCTCGAAGAC 23502
Query 53413 GTCGGGTGGTATCGGTATCCAC--TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAG 53470
| |||| || || || | || | ||| | |||| || | ||| | ||
Sbjct 23501 GGCGGGAGGCATTGGGCTGAACATTCATCGTA--TCCGAGCCACCGGGTCGTACATTGCC 23444
Query 53471 GGGACGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529
|| || ||||| ||| ||| || || |||||||||||||| |||||||||||||| ||
Sbjct 23443 GGCACAAACGG-GTCCTCGAACGGGATTGTGCCTATGCTCCGTGTCTTCAACAACACCGC 23385
Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGC 53588
| || ||| |||| |||||| ||||| | ||| | |||| || || ||||| ||||
Sbjct 23384 GAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTG-CGTTTGCTATTTACCTTGAGC 23326
Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648
| ||||||||||| | | |||||| | || |||| |||||| || | || ||
Sbjct 23325 CTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGGAAGGAGGAAG 23266
Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708
| ||| || || || || ||||| |||| || || || || ||| | || |
Sbjct 23265 TCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATGAAGCGTGTCG 23206
Query 53709 AGAAGGACGAGGAGTGG 53725
||||| ||| || |||
Sbjct 23205 AGAAGAACGGCGAATGG 23189
Score = 100 bits (110), Expect = 3e-16
Identities = 143/200 (72%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGA 55784
|||||| | ||| ||| || ||||||||| ||||| | ||||| | |||
Sbjct 22146 TCAAGGCTTTATACAAGACAGTCTGGGAGATTTCACAGCGAAC---GATTGTACAGATGG 22090
Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844
||| ||||| ||||||| |||||||||||| |||||||| |||||| | | || | |
Sbjct 22089 CTGCCGATCGCGGTGCGTTCATCGACCAGTCTCAGTCTCTCAACATCCACCTAAAGGACC 22030
Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904
| || ||| ||| | | | ||||||||| || |||||| || |||||||| |
Sbjct 22029 CAACAATGGGGAAGATCACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCTCAAGACTG 21970
Query 55905 GTATGTACTATCTGCGGACC 55924
| ||||||||||| || |||
Sbjct 21969 GGATGTACTATCTCCGAACC 21950
>seq71
Length=73752
Score = 84.2 bits (92), Expect = 2e-11
Identities = 197/292 (67%), Gaps = 4/292 (1%)
Strand=Plus/Plus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|||||| ||||||| || | |||||| ||| |||| ||| ||||| |||||||
Sbjct 24232 CGCGTGTAGATGTAACGAGCGCTGGCACAATCGCTGCCTCCTTGGAGCCGACTTCCAAAA 24291
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| || |||||||| ||||| |||||| | || |||||| |||||||||||
Sbjct 24292 TTACCGCTAGGCTCGAGACAGTTGACGTTGTTCGATCCGACGAAAGTCTGAGCCAAACCG 24351
Query 152146 ACAATCGTGCCCTGCAGA-CTCGCTTCACCGTGGTGATACGCCGT-CTGCTCCGCGATGT 152203
||||| || ||||||| | || || || || |||||| | || ||| | | | ||
Sbjct 24352 ACAATGGTCTGCTGCAGAGATTGC-TCGCCATGCTGATACCCTGTGATGC-CAGATACGT 24409
Query 152204 ATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAA 152263
| || || | || |||| |||||||| | ||| ||| ||||| || || | |
Sbjct 24410 AACCTGCAAGCTCAACCACTTTCATGTCTTTTCTCACGTTTCGCTTGAAGCATGCAAATA 24469
Query 152264 TCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315
||||| || || ||| || | || || || || |||||||| ||
Sbjct 24470 GAACCTTCCGTTGCCCTGGCTTAAGTCCATCGACGACAGAGGGAATCGACCG 24521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547189384781800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |