Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 161 1e-34
seq3688 102 9e-17
seq1350 100 3e-16
seq1271 96.9 4e-15
seq256 95.1 1e-14
>seq3328
Length=87304
Score = 161 bits (178), Expect = 1e-34
Identities = 166/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475
|||||||||| || || || ||||| || || | ||||| || ||| |||| ||| |
Sbjct 25372 TTGTCAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCG 25431
Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535
||| |||||||||| || |||||||| ||||| ||||||||||| ||||||||| | |
Sbjct 25432 ACAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGA 25491
Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595
| || || || ||||| || ||||||| ||||| || | ||||| || |||||||||
Sbjct 25492 TCTTCGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGG 25551
Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || || | || || || || ||
Sbjct 25552 AATCCACTCTCCACCTCGTGCTCCGCCTCCGTGGCGG 25588
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || |||||||| ||||| || | ||| | ||| | ||| |
Sbjct 25104 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCAGACACCATCGACAATGTCAAGTCC 25163
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||||||||| || |||||||| || |||||||| | || ||||| || ||
Sbjct 25164 AAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCAAA 25223
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| ||||| || | || |||||| | |||||||| |||| ||||| |||||||| ||
Sbjct 25224 CAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCCAC 25283
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| | |||||||| || ||
Sbjct 25284 TTGGTCCTACGTCTTCGGGGAGG 25306
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| ||||||||||| || ||||||||||| || || ||||| || ||
Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || || ||||| ||||| || || || || |||||
Sbjct 25650 GACACGATTGACAATGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCAA 25709
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || |||||||| ||||||| | || || | ||||| ||
Sbjct 25710 CAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAAC 25769
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| || || || || || || || || ||| | |||||||| || |||
Sbjct 25770 ATTCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGGGGA 25817
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| ||||| || ||||| || || || || || || |||
Sbjct 25817 AATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATC 25876
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| || | ||| | || ||||| ||||||||||| || || ||||||||
Sbjct 25877 AGACACGATTGACAACGTTAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 25936
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| | || || || |||||||| | ||||| | || || || || || ||
Sbjct 25937 GCAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACACTGAGTGATTACAA 25996
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||| | || | ||| | || || ||||||||
Sbjct 25997 CATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGG 26044
Score = 111 bits (122), Expect = 2e-19
Identities = 121/159 (76%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| ||||| || ||||| || || | || |||||| || |
Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAG--AGCT 26103
Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| | |||| || | ||| || |||||||| || ||||| ||||| |||||||
Sbjct 26104 CCGACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACC 26163
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
||||||| | || |||||||| ||||| || |||||||
Sbjct 26164 AGCAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATG 26202
>seq3688
Length=146739
Score = 102 bits (112), Expect = 9e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964
|| || |||| |||||| || || ||||| || | | ||| |||||| ||||| |||
Sbjct 22830 AGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGTATACTCGATAATTTCGGTG 22889
Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024
|||||||| || |||||| || || || |||||||| |||| |||||| |||
Sbjct 22890 CACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCATGCG 22949
Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083
|||||||| |||| | ||| | |||||||| ||| | || |||||| | || |||
Sbjct 22950 TCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTGGGCCTCGAGGATTGAGTACCA 23008
Score = 100 bits (110), Expect = 3e-16
Identities = 318/487 (65%), Gaps = 11/487 (2%)
Strand=Plus/Plus
Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266
||| ||| || ||||| ||| |||||| ||| || ||| |||| || || |||
Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248
Query 81267 CAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326
|| ||||| ||| | ||||| | || || || |||||| || | ||| || |
Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308
Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG----CCAC 81382
|| || || ||||| ||||| || || | || | || | ||| || | ||||
Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACG-CACCTGGCCGCTTGTTACCAC 23367
Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442
| |||| ||| || | || || ||| || ||||| | |||||| | || || | |
Sbjct 23368 CTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCG 23427
Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA-AGA 81501
| ||||| || || | || |||||| |||| || | | ||| || ||
Sbjct 23428 AGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATAC-GATGAATGTTCAGC 23486
Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561
|| ||||| || | | ||| || ||| |||| || |||| ||| || || || ||
Sbjct 23487 CCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCT 23546
Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621
|| ||||| || | ||||||||||| | ||| || || || ||| || || | |||
Sbjct 23547 TCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGG--TTGTGGAG 23604
Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679
|| || ||||| || ||||||| ||||| ||||||| | ||||| || | ||
Sbjct 23605 TACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTAT 23664
Query 81680 AGGTTTC 81686
|||| ||
Sbjct 23665 AGGTCTC 23671
Score = 93.3 bits (102), Expect = 5e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || ||||||||||| || |||||||| || ||||||||| | ||||||
Sbjct 21951 GTTCGGAGATAGTACATCCCAGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTG 22010
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| |||| | | ||| |||| || | | |||||| |||||||||||||| ||||
Sbjct 22011 GTGATCTTCCCCATTGTTGGGTCCTTTAGGTGGATGTTGAGAGACTGAGACTGGTCGATG 22070
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| || || ||||| || ||||| | | ||| | |||| ||| ||||| |||||
Sbjct 22071 AACGCACCGCGATCGGCAGCCATCTGTACAATCGTTCGCTGTGAAATCTCCCAGACTGT 22129
>seq1350
Length=581194
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
|||||||| || || || || ||||| ||||| || || || || || |||||||||||
Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || ||||| | ||||| ||| |||| ||||| ||||| || || || || ||
Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899
Query 27619 CGTCTTCGCGGTGGA 27633
|| || |||||||||
Sbjct 375898 CGGCTGCGCGGTGGA 375884
>seq1271
Length=109735
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772
||| || |||| || || || |||||| || |||||||| || || || ||
Sbjct 95240 TCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTTTGCATC 95299
Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832
||||||||||| || |||||||| || ||||| || ||| | || |||||||| || ||
Sbjct 95300 AATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGAACTTAT 95359
Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865
|||||| || |||||||| ||| || |||||
Sbjct 95360 CTCTCGCGATGAGGGGCTTCACACTGACTTTGC 95392
>seq256
Length=121632
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/192 (71%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 27405 AATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463
||| ||| | ||| |||||||| || || || ||||| || || || ||||| || ||
Sbjct 86578 AATCCAACAGCTTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTCGAATCGA 86637
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
| || | ||| | ||| | ||| | || || ||||||||||| || || || || ||||
Sbjct 86638 GCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACC 86697
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||| || | || || || || ||||| | ||||||| || || || | ||||| |
Sbjct 86698 AGCAACGGTTGATCTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACA 86757
Query 27584 ATGTCCAAAAGG 27595
| |||| ||||
Sbjct 86758 ACATCCAGAAGG 86769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570282661527920
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