Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3328 161 1e-34 seq3688 102 9e-17 seq1350 100 3e-16 seq1271 96.9 4e-15 seq256 95.1 1e-14 >seq3328 Length=87304 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| || || || ||||| || || | ||||| || ||| |||| ||| | Sbjct 25372 TTGTCAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCG 25431 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 ||| |||||||||| || |||||||| ||||| ||||||||||| ||||||||| | | Sbjct 25432 ACAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGA 25491 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || || || ||||| || ||||||| ||||| || | ||||| || ||||||||| Sbjct 25492 TCTTCGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGG 25551 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || | || || || || || Sbjct 25552 AATCCACTCTCCACCTCGTGCTCCGCCTCCGTGGCGG 25588 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | ||| | ||| | ||| | Sbjct 25104 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCAGACACCATCGACAATGTCAAGTCC 25163 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || |||||||| || |||||||| | || ||||| || || Sbjct 25164 AAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCAAA 25223 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| || | || |||||| | |||||||| |||| ||||| |||||||| || Sbjct 25224 CAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCCAC 25283 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | |||||||| || || Sbjct 25284 TTGGTCCTACGTCTTCGGGGAGG 25306 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||||| || ||||||||||| || || ||||| || || Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| ||||| || || || || ||||| Sbjct 25650 GACACGATTGACAATGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCAA 25709 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||| ||||||| | || || | ||||| || Sbjct 25710 CAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAAC 25769 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || || || || || || ||| | |||||||| || ||| Sbjct 25770 ATTCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGGGGA 25817 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| ||||| || ||||| || || || || || || ||| Sbjct 25817 AATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATC 25876 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| | || ||||| ||||||||||| || || |||||||| Sbjct 25877 AGACACGATTGACAACGTTAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 25936 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || || || |||||||| | ||||| | || || || || || || Sbjct 25937 GCAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACACTGAGTGATTACAA 25996 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||| | || | ||| | || || |||||||| Sbjct 25997 CATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGG 26044 Score = 111 bits (122), Expect = 2e-19 Identities = 121/159 (76%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| ||||| || ||||| || || | || |||||| || | Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAG--AGCT 26103 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | |||| || | ||| || |||||||| || ||||| ||||| ||||||| Sbjct 26104 CCGACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACC 26163 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||||||| | || |||||||| ||||| || ||||||| Sbjct 26164 AGCAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATG 26202 >seq3688 Length=146739 Score = 102 bits (112), Expect = 9e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 || || |||| |||||| || || ||||| || | | ||| |||||| ||||| ||| Sbjct 22830 AGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGTATACTCGATAATTTCGGTG 22889 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 |||||||| || |||||| || || || |||||||| |||| |||||| ||| Sbjct 22890 CACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCATGCG 22949 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 |||||||| |||| | ||| | |||||||| ||| | || |||||| | || ||| Sbjct 22950 TCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTGGGCCTCGAGGATTGAGTACCA 23008 Score = 100 bits (110), Expect = 3e-16 Identities = 318/487 (65%), Gaps = 11/487 (2%) Strand=Plus/Plus Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 ||| ||| || ||||| ||| |||||| ||| || ||| |||| || || ||| Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248 Query 81267 CAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326 || ||||| ||| | ||||| | || || || |||||| || | ||| || | Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308 Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG----CCAC 81382 || || || ||||| ||||| || || | || | || | ||| || | |||| Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACG-CACCTGGCCGCTTGTTACCAC 23367 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442 | |||| ||| || | || || ||| || ||||| | |||||| | || || | | Sbjct 23368 CTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCG 23427 Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA-AGA 81501 | ||||| || || | || |||||| |||| || | | ||| || || Sbjct 23428 AGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATAC-GATGAATGTTCAGC 23486 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || ||||| || | | ||| || ||| |||| || |||| ||| || || || || Sbjct 23487 CCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCT 23546 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 || ||||| || | ||||||||||| | ||| || || || ||| || || | ||| Sbjct 23547 TCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGG--TTGTGGAG 23604 Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679 || || ||||| || ||||||| ||||| ||||||| | ||||| || | || Sbjct 23605 TACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTAT 23664 Query 81680 AGGTTTC 81686 |||| || Sbjct 23665 AGGTCTC 23671 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || ||||||||||| || |||||||| || ||||||||| | |||||| Sbjct 21951 GTTCGGAGATAGTACATCCCAGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTG 22010 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| |||| | | ||| |||| || | | |||||| |||||||||||||| |||| Sbjct 22011 GTGATCTTCCCCATTGTTGGGTCCTTTAGGTGGATGTTGAGAGACTGAGACTGGTCGATG 22070 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || || ||||| || ||||| | | ||| | |||| ||| ||||| ||||| Sbjct 22071 AACGCACCGCGATCGGCAGCCATCTGTACAATCGTTCGCTGTGAAATCTCCCAGACTGT 22129 >seq1350 Length=581194 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| || || || || ||||| ||||| || || || || || ||||||||||| Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| | ||||| ||| |||| ||||| ||||| || || || || || Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899 Query 27619 CGTCTTCGCGGTGGA 27633 || || ||||||||| Sbjct 375898 CGGCTGCGCGGTGGA 375884 >seq1271 Length=109735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772 ||| || |||| || || || |||||| || |||||||| || || || || Sbjct 95240 TCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTTTGCATC 95299 Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 ||||||||||| || |||||||| || ||||| || ||| | || |||||||| || || Sbjct 95300 AATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGAACTTAT 95359 Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 |||||| || |||||||| ||| || ||||| Sbjct 95360 CTCTCGCGATGAGGGGCTTCACACTGACTTTGC 95392 >seq256 Length=121632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 27405 AATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||| ||| | ||| |||||||| || || || ||||| || || || ||||| || || Sbjct 86578 AATCCAACAGCTTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTCGAATCGA 86637 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 | || | ||| | ||| | ||| | || || ||||||||||| || || || || |||| Sbjct 86638 GCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACC 86697 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || | || || || || ||||| | ||||||| || || || | ||||| | Sbjct 86698 AGCAACGGTTGATCTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACA 86757 Query 27584 ATGTCCAAAAGG 27595 | |||| |||| Sbjct 86758 ACATCCAGAAGG 86769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570282661527920