Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3328 105 4e-18 seq1350 89.7 3e-13 >seq3328 Length=87304 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || | |||||||||||||||||||| ||||| ||||| || |||| || Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | || ||||| || || || || ||||| ||||| || || | |||||||||||| || Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT-TG 25908 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | |||| |||||| | ||| |||||| || ||||||| |||||||| || Sbjct 25907 AATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || ||||| Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 >seq1350 Length=581194 Score = 89.7 bits (98), Expect = 3e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||||| ||| |||||| || || || || || || || || || Sbjct 375894 AGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGG 375953 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || ||||| || || | |||||||||||||| || | || ||| Sbjct 375954 CCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCC 376013 Query 34609 TTGTCTG 34615 ||||||| Sbjct 376014 TTGTCTG 376020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714675030603