Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 105 4e-18
seq1350 89.7 3e-13
>seq3328
Length=87304
Score = 105 bits (116), Expect = 4e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || | |||||||||||||||||||| ||||| ||||| || |||| ||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| || ||||| || || || || ||||| ||||| || || | |||||||||||| ||
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT-TG 25908
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| |||| |||||| | ||| |||||| || ||||||| |||||||| ||
Sbjct 25907 AATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || || || |||||
Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
>seq1350
Length=581194
Score = 89.7 bits (98), Expect = 3e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| ||||| ||||| ||| |||||| || || || || || || || || ||
Sbjct 375894 AGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGG 375953
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| ||||| || ||||| || || | |||||||||||||| || | || |||
Sbjct 375954 CCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCC 376013
Query 34609 TTGTCTG 34615
|||||||
Sbjct 376014 TTGTCTG 376020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314714675030603
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |