Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 89.7 4e-13
>seq3328
Length=87304
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || ||||||||||| || || || | || || || ||| ||
Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCC 26105
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||| ||||| | ||||| || || || ||||| ||| |||| |
Sbjct 26106 GAC-----ACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAG 26160
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || || || ||||| ||||| || |||| || | || | ||||| ||||
Sbjct 26161 ACCAGCAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATT 26220
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| ||||||||||| |||| |||| | | | ||||||||
Sbjct 26221 ACAACATCCAGAAAGAGAGCACCCTGCACCTGGTGCTTAGGCTCCGTGGCGG 26272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355845524448957
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |