Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 179 8e-40
seq256 147 5e-30
seq511 111 3e-19
seq1271 105 1e-17
>seq3328
Length=87304
Score = 179 bits (198), Expect = 8e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| ||||| ||||| |||| || |||||||| || ||||| |||||||| |||
Sbjct 26045 ACCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACT 25986
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| | || || || || |||||||| || || ||||| ||
Sbjct 25985 CAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGG 25926
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||||| ||||||| || ||| | || || ||||| || | ||||||
Sbjct 25925 GATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGAC 25866
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||| || || |||||||| ||||| | ||||| ||||| || ||||||
Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817
Score = 158 bits (174), Expect = 3e-33
Identities = 176/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || | ||| ||||| || | ||||| ||||| ||||||||||| || |
Sbjct 26273 ACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGA 26214
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || ||||||||||| || || || || ||||||||||| || || ||||| ||
Sbjct 26213 CAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 26154
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCT-TCG 283049
||||||||| || || || ||||| ||| || ||| |||| || ||||| || ||| ||
Sbjct 26153 AATACCCTCTTTATCCTGAATCTT-GCTCTTGACGTTATCAATTGTGTCGGA-GCTCTCA 26096
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| | ||||||||||| || || | |||||| || || ||||||||
Sbjct 26095 ACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| ||||| || || || || | ||| ||| ||||||||||||||||| |
Sbjct 25589 ACCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 25530
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || |||||||| || || |||||||| ||||||||||| || || || ||
Sbjct 25529 GAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 25470
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||| ||||| |||||||| || || || | ||||| || ||||| | ||| ||
Sbjct 25469 AATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCAC 25410
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| | ||||| ||||| || || | ||||| ||
Sbjct 25409 CTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGAC 25374
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || || || | || ||||| || ||||||||||| | |
Sbjct 25816 CCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAA 25757
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || | |||||||| ||||| || || || ||||| | ||| |||||||| ||
Sbjct 25756 AGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGG 25697
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| ||||| || || ||||| | || || | || || ||||| || | ||||||
Sbjct 25696 ATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACC 25637
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 25636 TCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || || || || |||| || | ||| || || |||||||| ||||| |
Sbjct 25306 CCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAT 25247
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| || || || ||||| |||||||||||||| || || || || |||
Sbjct 25246 AGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGA 25187
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||| || ||||| | || || | ||||| ||||| |||| || ||
Sbjct 25186 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACC 25127
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| ||||| || ||
Sbjct 25126 TCAAGGGTGATGGTCTTGCCAGT 25104
>seq256
Length=121632
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | ||| |||||||||||||| | || || || || ||||||
Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| ||||| ||||| || || || |||||||| |||||||| | || || | |||
Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| | |||||| ||||| ||||| ||||||||||||| |||||| |||||
Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589
>seq511
Length=40481
Score = 111 bits (122), Expect = 3e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 316984 TCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAAC 317043
|||| ||||||||| ||||| |||| ||| ||||| | ||||| || |||| |
Sbjct 35846 TCGATGTCATGCTCCACATACACAGTACGCAGCTCGTCCTTGGGTGGGAAGCCGTCCAGC 35905
Query 317044 TGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGA 317103
|| || || |||| | |||||| || || ||||||||||||||||||||||| || ||
Sbjct 35906 TGTCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCATTGGGGCCACACAGG 35965
Query 317104 CCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162
|| ||||| || || ||| || | | || | |||||||| || ||||| |||||
Sbjct 35966 CCGTACCGCTTGCCACGCTTGAGGTGCAGGCGAGCATTGTTCAGCAGGATCTTGCCACC 36024
Score = 100 bits (110), Expect = 6e-16
Identities = 154/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 316166 TGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGAT 316225
|||| || || || ||||| ||||| ||||| | ||||| ||| |||| || || |
Sbjct 33096 TGTCCTCGCCAGATGCATACCGCCACGCAATGTAGTCGTTGGGGGTCTTGTCCAGGTGCT 33155
Query 316226 CCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 316285
||| ||||||||||| |||||||| ||||| || || | ||||| || || |||||||
Sbjct 33156 GCTCAATGTGGTGGAAGGCGTGCTGGGCCACATAGGCTACACGCAGGTTGGGGTGCTTCC 33215
Query 316286 AAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTC 316345
| || | || | | ||| |||| || ||| || |||| || || | || || |
Sbjct 33216 ACACAGTGCCCTCTGCAGTCTCCAGCTCCCCAGTGAGCAGCTTGATCATGGTGGACTTAC 33275
Query 316346 CCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAG 316385
| || ||||| | || | |||| | | | ||||||||
Sbjct 33276 CAGCTCCGTTAGCTCCAATGACAGCCACGCGCGAGTTGAG 33315
>seq1271
Length=109735
Score = 105 bits (116), Expect = 1e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| | |||||| ||| | || ||||| || | | | ||| |||||||||||||
Sbjct 95490 GAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTTTGATGAAGCAATATATCGAA 95549
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
|| || || |||||| || || | || ||||| || |||| || ||||| ||||
Sbjct 95550 TTTGTGGCCGATCGTCTTCTCCTAGCTCTAGGCAACCAGAAGTACTACAACTCGTCGAAC 95609
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| |||| || |||||| || ||| | || || || ||||||||||| ||||||
Sbjct 95610 CCGTTCGACTTCATGGAGTCGATATCATTGGCTGGCAAGACCAACTTCTTCGAGAAGCGT 95669
Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410
|| | || ||||| | | |||||||
Sbjct 95670 GTTGGTGACTATCAGAAGGCCGGTGT 95695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046687016452714
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |