Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3328 179 8e-40 seq256 147 5e-30 seq511 111 3e-19 seq1271 105 1e-17 >seq3328 Length=87304 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| ||||| |||| || |||||||| || ||||| |||||||| ||| Sbjct 26045 ACCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACT 25986 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| | || || || || |||||||| || || ||||| || Sbjct 25985 CAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGG 25926 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||||| ||||||| || ||| | || || ||||| || | |||||| Sbjct 25925 GATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGAC 25866 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || || |||||||| ||||| | ||||| ||||| || |||||| Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 Score = 158 bits (174), Expect = 3e-33 Identities = 176/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || | ||| ||||| || | ||||| ||||| ||||||||||| || | Sbjct 26273 ACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGA 26214 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 26213 CAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 26154 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCT-TCG 283049 ||||||||| || || || ||||| ||| || ||| |||| || ||||| || ||| || Sbjct 26153 AATACCCTCTTTATCCTGAATCTT-GCTCTTGACGTTATCAATTGTGTCGGA-GCTCTCA 26096 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||||| || || | |||||| || || |||||||| Sbjct 26095 ACTTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||| ||| ||||||||||||||||| | Sbjct 25589 ACCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 25530 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || |||||||| ||||||||||| || || || || Sbjct 25529 GAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 25470 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| |||||||| || || || | ||||| || ||||| | ||| || Sbjct 25469 AATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCAC 25410 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||||| ||||| || || | ||||| || Sbjct 25409 CTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGAC 25374 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | || ||||| || ||||||||||| | | Sbjct 25816 CCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAA 25757 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||||| ||||| || || || ||||| | ||| |||||||| || Sbjct 25756 AGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGG 25697 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||| || || ||||| | || || | || || ||||| || | |||||| Sbjct 25696 ATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACC 25637 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 25636 TCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||| ||||| | Sbjct 25306 CCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAT 25247 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || || ||||| |||||||||||||| || || || || ||| Sbjct 25246 AGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGA 25187 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| | || || | ||||| ||||| |||| || || Sbjct 25186 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACC 25127 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 25126 TCAAGGGTGATGGTCTTGCCAGT 25104 >seq256 Length=121632 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||| |||||||||||||| | || || || || |||||| Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || ||||| ||||| || || || |||||||| |||||||| | || || | ||| Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | |||||| ||||| ||||| ||||||||||||| |||||| ||||| Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589 >seq511 Length=40481 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 316984 TCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAAC 317043 |||| ||||||||| ||||| |||| ||| ||||| | ||||| || |||| | Sbjct 35846 TCGATGTCATGCTCCACATACACAGTACGCAGCTCGTCCTTGGGTGGGAAGCCGTCCAGC 35905 Query 317044 TGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGA 317103 || || || |||| | |||||| || || ||||||||||||||||||||||| || || Sbjct 35906 TGTCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCATTGGGGCCACACAGG 35965 Query 317104 CCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162 || ||||| || || ||| || | | || | |||||||| || ||||| ||||| Sbjct 35966 CCGTACCGCTTGCCACGCTTGAGGTGCAGGCGAGCATTGTTCAGCAGGATCTTGCCACC 36024 Score = 100 bits (110), Expect = 6e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 316166 TGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGAT 316225 |||| || || || ||||| ||||| ||||| | ||||| ||| |||| || || | Sbjct 33096 TGTCCTCGCCAGATGCATACCGCCACGCAATGTAGTCGTTGGGGGTCTTGTCCAGGTGCT 33155 Query 316226 CCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 316285 ||| ||||||||||| |||||||| ||||| || || | ||||| || || ||||||| Sbjct 33156 GCTCAATGTGGTGGAAGGCGTGCTGGGCCACATAGGCTACACGCAGGTTGGGGTGCTTCC 33215 Query 316286 AAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTC 316345 | || | || | | ||| |||| || ||| || |||| || || | || || | Sbjct 33216 ACACAGTGCCCTCTGCAGTCTCCAGCTCCCCAGTGAGCAGCTTGATCATGGTGGACTTAC 33275 Query 316346 CCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAG 316385 | || ||||| | || | |||| | | | |||||||| Sbjct 33276 CAGCTCCGTTAGCTCCAATGACAGCCACGCGCGAGTTGAG 33315 >seq1271 Length=109735 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264 || ||| | |||||| ||| | || ||||| || | | | ||| ||||||||||||| Sbjct 95490 GAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTTTGATGAAGCAATATATCGAA 95549 Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324 || || || |||||| || || | || ||||| || |||| || ||||| |||| Sbjct 95550 TTTGTGGCCGATCGTCTTCTCCTAGCTCTAGGCAACCAGAAGTACTACAACTCGTCGAAC 95609 Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384 || |||| || |||||| || ||| | || || || ||||||||||| |||||| Sbjct 95610 CCGTTCGACTTCATGGAGTCGATATCATTGGCTGGCAAGACCAACTTCTTCGAGAAGCGT 95669 Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410 || | || ||||| | | ||||||| Sbjct 95670 GTTGGTGACTATCAGAAGGCCGGTGT 95695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046687016452714