Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3328 147 5e-30 seq256 136 1e-26 >seq3328 Length=87304 Score = 147 bits (162), Expect = 5e-30 Identities = 145/186 (78%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| |||||||| |||||||||||||| || ||||| Sbjct 25102 TCACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCAGACACCATCGACAATGTCAAGT 25161 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| ||||| || |||||||| ||||| || | ||||| ||||| | Sbjct 25162 CCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCA 25221 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 ||||||||||||| || |||| || | || |||||| |||| || || || || || | Sbjct 25222 AACAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCC 25281 Query 178123 ATCTTG 178128 | |||| Sbjct 25282 A-CTTG 25286 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| ||||||||| | || || || ||||| ||| Sbjct 26049 CAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCCGAC 26108 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 26109 ACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAGCAG 26168 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||||| || ||||| ||||| | | ||||| ||| || Sbjct 26169 CGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAACATC 26228 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||||| || || Sbjct 26229 CAGAAAGAGAGCACCCTGCACCTGGT 26254 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || || || |||||| | ||||||||| || || |||||||| Sbjct 25374 GTCAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCGAC 25433 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || || ||||| ||||||||||| || || ||||| || ||||| || | ||| Sbjct 25434 AATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATC 25493 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 |||||||| || ||||| || ||||| | ||||| |||| || ||| ||||||| ||| Sbjct 25494 TTCGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAA 25553 Query 178113 TCAACACTGCATCTTGT 178129 || || || || || || Sbjct 25554 TCCACTCTCCACCTCGT 25570 >seq256 Length=121632 Score = 136 bits (150), Expect = 1e-26 Identities = 140/182 (77%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 ||||| || ||||| || || || || |||||||||||||| ||| ||| |||||| Sbjct 86589 TTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGC---GACACC 86645 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 86646 ATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAACGG 86705 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | |||||||| || || ||| | || ||||| | || ||| |||| || ||| |||| Sbjct 86706 TTGATCTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAACATCCAG 86765 Query 178107 AA 178108 || Sbjct 86766 AA 86767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203671189861854