Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2166 91.5 3e-13 seq1688 87.8 4e-12 >seq2166 Length=40481 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 318995 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 319054 |||| || || || ||||| ||||| || || | |||||| ||| |||| || || | Sbjct 33096 TGTCCTCGCCAGATGCATACCGCCACGCAATGTAGTCGTTGGGGGTCTTGTCCAGGTGCT 33155 Query 319055 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 319114 ||| ||||||||||| || ||||| ||||| || || | ||||| || || ||||||| Sbjct 33156 GCTCAATGTGGTGGAAGGCGTGCTGGGCCACATAGGCTACACGCAGGTTGGGGTGCTTCC 33215 Query 319115 AAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCC 319174 | ||| | || | | |||| | || ||||||| ||| || | |||| || | Sbjct 33216 ACACAGTGCCCTCTGCAGTCTCCAGCTCCCCAGTGAGCAGCTTGATCATGGTGGACTTAC 33275 Query 319175 CCGCACCGTT 319184 | || ||||| Sbjct 33276 CAGCTCCGTT 33285 >seq1688 Length=109735 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 || |||||||| | | ||| || || |||||||| || ||||| || || | | Sbjct 95514 GGTATGAACGCCGCTTTGATGAAGCAATATATCGAATTTGTGGCCGATCGTCTTCTCCTA 95573 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || || || || |||| |||||||| |||||| || | || |||||| || Sbjct 95574 GCTCTAGGCAACCAGAAGTACTACAACTCGTCGAACCCGTTCGACTTCATGGAGTCGATA 95633 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||||||||||||||| |||||||| |||||||||||| | | ||| Sbjct 95634 TCATTGGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAGAAGGCCGGT 95693 Query 230632 GTGATG 230637 || ||| Sbjct 95694 GTTATG 95699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057771263837330