Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1688 145 8e-30 seq640 125 7e-24 seq3645 114 1e-20 seq1435 113 5e-20 seq1258 86.0 6e-12 >seq1688 Length=109735 Score = 145 bits (160), Expect = 8e-30 Identities = 201/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| |||||||| ||||| |||||||||| || ||| | ||||| || Sbjct 94789 TGGCAGATGTACAAGAAGGCCGAAGCGTCATTCTGGACCGCGGAAGAGATTGACCTCTCG 94848 Query 116699 AAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || || | ||| ||| | || | ||||| | || ||| |||||||| || Sbjct 94849 AAAGATTGGCACGATTGGAACAACCGACTCAACGATGATGAACGCTATTTCATCTCCCAT 94908 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| || || || || || |||||||||||||| || || ||||| ||| Sbjct 94909 GTCCTTGCCTTCTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTCGTTGAGCGCTTC 94968 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || || ||| | | ||||| || ||||||||||| ||||||||| |||||| Sbjct 94969 AGTGGCGAAGTTCAGATACCTGAGGCACGATGCTTCTACGGTTTTCAGATCATGATGGAG 95028 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||| | ||||| || | || || ||||||||||| || Sbjct 95029 AACATCCACTCCGAGACCTACTCCCTTCTCATCGACACTTA 95069 >seq640 Length=121632 Score = 125 bits (138), Expect = 7e-24 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||||||| |||| |||||| | | ||||| | | Sbjct 86589 TTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACCATC 86648 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| || |||||||| ||||||||||||| | Sbjct 86649 GACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAACGGTTG 86708 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||| |||| || | ||||| || ||||||||||||||||||| Sbjct 86709 ATCTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAACATCCAGAAG 86768 Query 40879 GAGG 40882 | || Sbjct 86769 GTGG 86772 >seq3645 Length=87304 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| ||||| || ||||| |||| |||||| | | Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | ||||| || || | || || || || ||||| ||||||| Sbjct 25650 GACACGATTGACAATG-TCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCA 25708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| || ||||| || | | | || || ||||||||| Sbjct 25709 ACAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAA 25768 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| ||| | || || || || || Sbjct 25769 CATTCAGAAAGAGTCTACCCTCCACCTTGT 25798 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || || ||||| || || ||||||||| | || || ||| | | || | | | | Sbjct 25374 GTCAAGACCCTCACTGGGAAGACCATCACCTTGGAGGTGGAATCATCGGATACCATCGAC 25433 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | | |||| || || | |||||||||||||| || | || ||||| || | ||| Sbjct 25434 AATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATC 25493 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 | ||| || || ||||| || || | ||| || ||| ||||||||||||||| ||||| Sbjct 25494 TTCGCCGGGAAGCAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAA 25553 Query 40882 GCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || || || ||| | ||| | | ||||| Sbjct 25554 TCCACTCTCCACCTCGTGCTCCGCCTCCGTGGCGG 25588 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| | || || || | | |||| | | | | ||||| Sbjct 25102 TCACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCAGACACCATCGACAATGTCAAGT 25161 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| || ||||| || |||| ||||| || | |||| || |||| Sbjct 25162 CCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCA 25221 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 ||||||| || |||| || ||||| ||||| ||||||||||||||| |||| || | Sbjct 25222 AACAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCC 25281 Query 40892 A 40892 | Sbjct 25282 A 25282 >seq1435 Length=581194 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| ||||||| || || ||||||| ||| ||||| || || || Sbjct 376018 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTCATCTTCGCCGGCAAGCAACTCGAA 375959 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||||||||| |||||||||||| |||| || || || ||| || Sbjct 375958 GACGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 375899 Query 40903 CG 40904 || Sbjct 375898 CG 375897 >seq1258 Length=224305 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 |||||||| | ||| || ||||| ||||| || ||| |||||| |||||| || ||| Sbjct 143957 GCAGTTTCTGCAGCATCTTCTGGCTGAAGAAGCGTGGCTTCATGCACGGCCTCACCTTCT 143898 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||||||||| ||| || ||||| || || |||||||| || |||||| Sbjct 143897 CCAACGAGCTCATCAGCAGAGATGAGGGACTCCACACAGACTTTGCATGCCTGCTGT 143841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515194141026160