Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3645 105 6e-18 >seq3645 Length=87304 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | || | ||||| ||| | || |||||| || ||||||||||| Sbjct 26273 ACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGA 26214 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || |||||| ||||| |||||||| |||| | |||||||| || || || Sbjct 26213 CAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 26154 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||| || || ||| || || || | || | ||||| | |||||| || Sbjct 26153 AATACCCTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAAC 26094 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||| || || || ||||| || ||||| |||||||| Sbjct 26093 TTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||| ||||||||||||||||| |||| || || ||||| Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| |||| | |||||||| || || || || |||||||||||| | Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| ||||| | || | ||||| | || | ||||| || | || | ||| || Sbjct 25906 ATCTTTGACTTAACGTTGTCAATCGTGTCTGATGAT-TCGACTTCCAGCGTTATCGTCTT 25848 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || ||||| Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || ||||| |||||||| ||| | ||| ||| |||||| Sbjct 25571 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTC 25512 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| | |||||||||||| ||||| |||||||| ||||| Sbjct 25511 AAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTG 25452 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| ||| |||| || | || ||||| | ||| | || | Sbjct 25451 GATCTTAGCCTTCACATTGTCGATGGTATCCGATGAT-TCCACCTCCAAGGTGATGGTCT 25393 Query 118708 TGCCGGTCAGAGTTTTTACAA 118728 | || || || || || |||| Sbjct 25392 TCCCAGTGAGGGTCTTGACAA 25372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||||||||| ||||||||||| ||| | || | | |||||| || || Sbjct 25793 GTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTG 25734 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 || || ||| ||||||||||||| || || || || || || ||||| | |||| || | Sbjct 25733 CTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGT-ATCT 25675 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || | || | ||||| | |||||||||| || | || ||||| | Sbjct 25674 TCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAG 25615 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || ||||| Sbjct 25614 TGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || ||||| || || | || || || ||| Sbjct 25288 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCG 25229 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | ||||||||||| ||||| ||||| |||||||| | Sbjct 25228 AGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 25169 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 25168 ATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTG 25109 Query 118710 CCGGT 118714 || || Sbjct 25108 CCAGT 25104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809827084572