Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 105 6e-18
>seq3645
Length=87304
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | || | ||||| ||| | || |||||| || |||||||||||
Sbjct 26273 ACCGCCACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGA 26214
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || |||||| ||||| |||||||| |||| | |||||||| || || ||
Sbjct 26213 CAAAGTCCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 26154
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| ||||| || || ||| || || || | || | ||||| | |||||| ||
Sbjct 26153 AATACCCTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAAC 26094
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | ||| | ||| || || || ||||| || ||||| ||||||||
Sbjct 26093 TTCCAAGGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||| ||||||||||||||||| |||| || || |||||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
| ||| || || ||| |||| | |||||||| || || || || |||||||||||| |
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| ||||| | || | ||||| | || | ||||| || | || | ||| ||
Sbjct 25906 ATCTTTGACTTAACGTTGTCAATCGTGTCTGATGAT-TCGACTTCCAGCGTTATCGTCTT 25848
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || ||||| || || |||||
Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||||| || || || ||||| |||||||| ||| | ||| ||| ||||||
Sbjct 25571 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTC 25512
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| | |||||||||||| ||||| |||||||| |||||
Sbjct 25511 AAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTG 25452
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707
|| || || || | |||| ||| |||| || | || ||||| | ||| | || |
Sbjct 25451 GATCTTAGCCTTCACATTGTCGATGGTATCCGATGAT-TCCACCTCCAAGGTGATGGTCT 25393
Query 118708 TGCCGGTCAGAGTTTTTACAA 118728
| || || || || || ||||
Sbjct 25392 TCCCAGTGAGGGTCTTGACAA 25372
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| ||||||||||| ||||||||||| ||| | || | | |||||| || ||
Sbjct 25793 GTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTG 25734
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653
|| || ||| ||||||||||||| || || || || || || ||||| | |||| || |
Sbjct 25733 CTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGT-ATCT 25675
Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713
| || || | || | ||||| | |||||||||| || | || ||||| |
Sbjct 25674 TCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAG 25615
Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738
| || || || || || || |||||
Sbjct 25614 TGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 82.4 bits (90), Expect = 7e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || ||||| || || | || || || |||
Sbjct 25288 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCG 25229
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| || || |||| | ||||||||||| ||||| ||||| |||||||| |
Sbjct 25228 AGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 25169
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | || |||
Sbjct 25168 ATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTG 25109
Query 118710 CCGGT 118714
|| ||
Sbjct 25108 CCAGT 25104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433809827084572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |