Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 138 9e-28
seq640 86.0 5e-12
>seq3645
Length=87304
Score = 138 bits (152), Expect = 9e-28
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| |||||||||||| ||||||||||| || ||||| || |||| |||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || || ||||| ||||||||||| ||||| || || | |||||||||||| |
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| ||| ||||| || | || | |||| || || |||| || ||||||||
Sbjct 25906 ATCTTTGACTTAA-CGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || ||||| || |||||||||||
Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
>seq640
Length=121632
Score = 86.0 bits (94), Expect = 5e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| ||| ||| | || |||| || || || ||||| |
Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||||||| || ||||| || || | || ||||||||| || || ||| ||
Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | |||| | || ||||| | ||| || ||||| |||||||||||||| || |
Sbjct 86649 CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGA 86590
Query 45327 AG 45328
||
Sbjct 86589 AG 86588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395056464916711
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |