Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq2501 120 7e-23 >seq2501 Length=689 Score = 120 bits (132), Expect = 7e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 33117 ACCTGGCACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCCC 33176 || |||||| |||| || ||||| ||||| ||||| ||||| || | || ||||| Sbjct 172 ACGTGGCACCGGCCTTTCACCACGTACGAACTGGCCGCTTTGCAGGGCCTCGTGGACCCA 231 Query 33177 GAAGAGCAGTTGGTCCTCGACGGCCTGAGCGACAGCG-ACTGGCGCGAGCGGATCGGCAA 33235 || || ||| | | |||||||||||| ||| ||| | ||||||||||| |||||||| Sbjct 232 GAGGAACAGCTTGAACTCGACGGCCTGTCCGA-TGCGAATTGGCGCGAGCGCATCGGCAA 290 Query 33236 TGCGGTTCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTT 33295 ||||||||||| | ||||| ||| || |||| | ||||| | || ||| || | Sbjct 291 CGCGGTTCCGCCCGACGCGGCGACGGCGATTGCCGACACGATGGCAAAGACGCTGCTGCT 350 Query 33296 GGCTGAGGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCGTCAGGTCGC 33355 || | | ||||||| |||| |||| | |||||||||||| || | ||| | Sbjct 351 CGCGTGGTCCGGCGAGAGCTTCATGCTTTCCGCCCTGCCGATCTGGGTTCGGCCGGTGGG 410 Query 33356 CGT 33358 ||| Sbjct 411 CGT 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113729144830964